BAC Information

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BAC

Clone NameMSMg01-343J21
Chromosome1 (Build37)
Map Location 160,217,335 - 160,217,714
singlet/doubletsinglet
Overlap gene6430517E21Rik
Upstream geneRasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik, BC026585, Lztr2, LOC664935, LOC100039217
Downstream geneAstn1, Pappa2, 4930562F17Rik, EG240853, LOC664972, Rfwd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343J21.T7 (MSMg01no343_j21.b1)MSMg01-343J21.TJ (MSMg01no343_j21.g1)
ACCAG456883AG456884
length820853
length of high quality
(start - end)
386 (36 - 421)64 (64 - 127)
definitionCHROMAT_FILE: MSMg01no343_j21.b1 PHD_FILE: MSMg01no343_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:31 2005CHROMAT_FILE: MSMg01no343_j21.g1 PHD_FILE: MSMg01no343_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGAC
CTATAAAAAGCTCATCTCTTGAAGAGATGAAAAAGAGAAGAACACGTGCC
CAGCCAGTGTCCCTGTCTGCTTGCTCTAGCGTATCTGTAAGGAACAATTC
ATTCATGAATAAAATTAATTATTTCTTGAAGCAAGAATTAATCCTCTTTT
TCCCTGCCTGACTGACTCAAGATCTCTGTACTAAATCTTGTCTGAAAACA
TAACTGATCTTGCTCCCCTTCCTTGGCCACCCTGGAGGCTCCCTTTACTC
CTCCCTTCCTTCCTTCCTCCCTCCCTCCCTCCTTTCCCTTCCTTCCTTCC
TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT
CCTTCCTTCCTCCCTCCCTTCCTTTCTTCCTTTATTTATATCTACCCCAA
ATATACCCCCCATTTTTTTTTACTTTTTCAAATTTTTTTCTTTCTAAATT
ACTCCATTACTCCTCTTTTTTATACCCTCTTAACCTCTATCTTTCTTTTT
ATCATATTCCACACTCACCCCCCTCTTTATCCCTTCAAATATTCAACTCT
TCTATTTTTTTATTTTCCTCTTTTCTTTTTTTACCTTATTTATTTTTATA
TCTTTCACCCTCCAATTTCATCCACCTACATTCTCATCTCTCTTATATCC
CTCTCTCTCTTATTATTATCAATATTTTCAATATCCTATTATTATTTTTT
TTTTTTATATCCCATTCCACCTCCTTCTTTTTTCATTCTATTATATCTAC
CACCACTCTTCCTAACATTT
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTGGGATTTCTCAGAGGGTATATAAATGCTGGGCCCT
AGAGGCATGGTGGGTTGTTGGTTGTTGGATGTATGGACTAGGGCGTCACA
GCTCACGTGGTAGAAGTTCGTATGTCCTGCTGCAGTAGCAGCTCACGTGA
TGGAAGTCTGTAGCTCCTGCAGCAACCAGCTGAGGGGCCAGGGTGCCACT
TGTACCTCTGTTCCCAGCTGGTGTGCACAGCGAGCCAGGCCCGTCAGCGC
GGCGAGAGTTTATGTCCTGCTCCTCACCCCACCCGCACTCGCAGTCTGCC
TTTCATTGCTTCTTTTCCATTTCTTCACTGCCCCCATGTTTCTTTGTTCT
CCATATCCCCCCCCTCCCTCCTGTTCTTCTGACCTTTTCCCCTTAACTTT
CTTTTCTCCCCCTCCCACTTTTCCCGTCCCCCACACTTTTTCTCCCCCAC
TCCTAAACCTCCCATCCCTTTCTTCTCCAACTTCTTCTCTTCTTCCCCCC
CCTCCTTCTTTTTTCACCCACCATTCTCTTTTCTACTCCCCCCATTTTTC
CTCTTTATTCCTTTTTCCTTTCATCCCTTTCTCACCCACACTCTCCCACT
ACCTTTCTTCCTATTTATACTTTCATTCTCATTCCCCTTCCCCTCATTTC
TCATTTCCTTCACCTCTCCCACCCTCCTTCTATATCTTCCTCCCTCTTCT
CCCTCCTTCTCCCCTTTTTTTCCCTTCTTCCTCCGTCCCCCCTCTCCCTT
CTTTCTCTTTCATCTTACCCCTCCCCTTATATTTTCCCCATCTACTTCTC
CCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_j21.b1 MSMg01no343_j21.b1 CHROMAT_FILE:
MSMg01no343_j21.b1 PHD_FILE: MSMg01no343_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:31 2005
         (386 letters)



>mm_chr1_160217131_160217916
          Length = 786

 Score =  704 bits (364), Expect = 0.0
 Identities = 376/380 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgacctataaaaagctcatctcttgaagagatgaaaaagagaagaacacgtgc 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgacctagaaaaagctcatctcttgaagagatgaaaaagagaagaacacgtgc 264

                                                                       
Query: 65  ccagccagtgtccctgtctgcttgctctagcgtatctgtaaggaacaattcattcatgaa 124
           |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 265 ccagccagtgtccctgtctgcttgctctagagtatctgtaaggagcaattcattcatgaa 324

                                                                       
Query: 125 taaaattaattatttcttgaagcaagaattaatcctctttttccctgcctgactgactca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taaaattaattatttcttgaagcaagaattaatcctctttttccctgcctgactgactca 384

                                                                       
Query: 185 agatctctgtactaaatcttgtctgaaaacataactgatcttgctccccttccttggcca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agatctctgtactaaatcttgtctgaaaacataactgatcttgctccccttccttggcca 444

                                                                       
Query: 245 ccctggaggctccctttactcctcccttccttccttcctccctccctccctcctttccct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccctggaggctccctttactcctcccttccttccttcctccctccctccctcctttccct 504

                                                                       
Query: 305 tccttccttccttccttccttccttccttccttccttccttccttccttccttccttcct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tccttccttccttccttccttccttccttccttccttccttccttccttccttccttcct 564

                               
Query: 365 tccttccttcctccctccct 384
           |||||||||||| |||||||
Sbjct: 565 tccttccttccttcctccct 584


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 99
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)