BAC Information

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BAC

Clone NameMSMg01-343K02
Chromosome1 (Build37)
Map Location 74,668,663 - 74,851,289
singlet/doubletdoublet
Overlap geneStk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a
Upstream geneTns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25
Downstream geneLOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343K02.T7 (MSMg01no343_k02.b1)MSMg01-343K02.TJ (MSMg01no343_k02.g1)
ACCAG456893AG456894
length765775
length of high quality
(start - end)		386 (42 - 427)374 (68 - 441)
definitionCHROMAT_FILE: MSMg01no343_k02.b1 PHD_FILE: MSMg01no343_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:32 2005CHROMAT_FILE: MSMg01no343_k02.g1 PHD_FILE: MSMg01no343_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,850,904 - 74,851,289)(74,668,663 - 74,669,036)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAAGGCGGAATTCTGG
CACTGATGACTCTGGATCCCTGGGTCCTTCTAGACATCCCTACTGCTGTC
ATCCAAGCTCAGGCCTCAGCTAGGTATTAGCCGTGGTCCCCATAACCATA
ACGTTCTTTCTGACTATCATCCTTTTGGCCAGACCCCCACTCGTGTGGGA
ACCAGAGCACAACTGGTGTCTGCTTAAGAGTCTCTGCAGATTCCTCTTTA
ATAAAACCCAGTTCTTATGGCTACCCCATCCTCTGGTCGCTCTGATCAGC
CCTTGAGTTTTATATTCTTTACACAGAAGCTGCTCTGCTGATCCTTCAGC
AAGTGTAGGTCTCTCTCCCCTCAGAGTTATGGGTCTGGAAAGCCCTTCCC
CACCTCCCTATGGCTCTCTCTCACCCTGCAGGTCACAGTTTGTCCATCAC
TATTCAGAAGTCTTCCTGGCTGACAGTTTTATTGTTAAGGGGGAATGGCC
CCTTTTCCCACTAACTTAGTATACTTGGTCTCCTTGATTATCTTTTTTCT
TTTTCTATTCTTTCGTTTGTTTATCTTCTTCTCTCGCGCCCTCCCCTCTT
CTCCCGCTTCATTTTTCTCTTCACTATACTCTTACCTTCTCCTTCTTCTT
AACATTTTTCACTTATGACTTTTGATGTCACTCCTATTGGCGACCTCATC
CCCTTGTATTAATGCGTATGGGTTGCTCCAGTTCTTTTGCGCGCATATTT
ACTATCCCCCTTCCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGACCTATTCTGCTCTGGTACCTGCCTGGAGAC
ATTCAGTATTTGTGACTCTTCTCCCTTTCCCTATAATTATACCAATTGCT
GTCTTCTCTCTCTTCTGCCCCCAGATCCTGAAAGGCGTTCTGGATGGTGT
GTCCCACCTCCTTCCTGTACTCCGCATCCTGAGTAGTCTCCTATCCAGCT
GCAGTGACTCTGTGCTCTTGTATTCCTTCTGCCAGGAGGCAGGACTGCCT
GAGCTGCCTCTCAGCCTTCTTAGGTACAGCCAGGAGAGTAGCAGCATCCA
GCAGGTATATAGCCCAGCAGCCTCTGAAGACAAGGGGTTGTCCTTTTCCT
TGGCTCCTTTCCTTGGTCTCCTTTCCTTGGCAGCTCTTTCTTGGAGCTGT
AAATCTGTTTGACTCTGACCACCTCTTATTAGCTGTCCTCCTTTTTCTAA
AGACCAGACTGTTCCTTACAGATACTGGTACCCTCTGGTTCTCCCATCCT
GTATTATCACTCTTTGGCTATATTTGATAATATATATTTACTCACTCTAC
TTCCTCCTTCTTCTTTCCTTACCCTTCTTTTCTGTCCTCCTCATTATCTA
TGGGCGTTATCCCACTCTTCTTATCTTTTCTTCTTTATTTTACTCTTTCT
CTTCTATTCCCTATCCTCTAATCTTCTTACTATATTTATCCTTTAACTAC
TTTCTTCAACTCAATTTTTTATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_k02.b1 MSMg01no343_k02.b1 CHROMAT_FILE:
MSMg01no343_k02.b1 PHD_FILE: MSMg01no343_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:32 2005
         (386 letters)



>mm_chr1_74850704_74851489
          Length = 786

 Score =  700 bits (362), Expect = 0.0
 Identities = 380/386 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaattctggcactgatgactctggatccctgggtccttctagacatccctactgctgtca 60
           ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 586 gaattctggcactgaggactctggatctctgggtccttctagacatccctactgctgtca 527

                                                                       
Query: 61  tccaagctcaggcctcagctaggtattagccgtggtccccataaccataacgttctttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tccaagctcaggcctcagctaggtattagccgtggtccccataaccataacgttctttct 467

                                                                       
Query: 121 gactatcatccttttggccagacccccactcgtgtgggaaccagagcacaactggtgtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gactatcatccttttggccagacccccactcgtgtgggaaccagagcacaactggtgtct 407

                                                                       
Query: 181 gcttaagagtctctgcagattcctctttaataaaacccagttcttatggctaccccatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gcttaagagtctctgcagattcctctttaataaaacccagttcttatggctaccccatcc 347

                                                                       
Query: 241 tctggtcgctctgatcagcccttgagttttatattctttacacagaagctgctctgctga 300
           ||||||||||||||||||||||||||||||||| ||   |||||||||||||||||||||
Sbjct: 346 tctggtcgctctgatcagcccttgagttttatactccaaacacagaagctgctctgctga 287

                                                                       
Query: 301 tccttcagcaagtgtaggtctctctcccctcagagttatgggtctggaaagcccttcccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tccttcagcaagtgtaggtctctctcccctcagagttatgggtctggaaagcccttcccc 227

                                     
Query: 361 acctccctatggctctctctcaccct 386
           ||||||||||||||||||||||||||
Sbjct: 226 acctccctatggctctctctcaccct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no343_k02.g1 MSMg01no343_k02.g1 CHROMAT_FILE:
MSMg01no343_k02.g1 PHD_FILE: MSMg01no343_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:32 2005
         (374 letters)



>mm_chr1_74668463_74669236
          Length = 774

 Score =  700 bits (362), Expect = 0.0
 Identities = 371/374 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacctattctgctctggtacctgcctggagacattcagtatttgtgactcttctccctt 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 agacctattctgctctggtacctccctggagacattcagtatttgtgactcttctccctt 260

                                                                       
Query: 61  tccctataattataccaattgctgtcttctctctcttctgcccccagatcctgaaaggcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccctataattataccaattgctgtcttctctctcttctgcccccagatcctgaaaggcg 320

                                                                       
Query: 121 ttctggatggtgtgtcccacctccttcctgtactccgcatcctgagtagtctcctatcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctggatggtgtgtcccacctccttcctgtactccgcatcctgagtagtctcctatcca 380

                                                                       
Query: 181 gctgcagtgactctgtgctcttgtattccttctgccaggaggcaggactgcctgagctgc 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgcaatgactctgtgctcttgtattccttctgccaggaggcaggactgcctgagctgc 440

                                                                       
Query: 241 ctctcagccttcttaggtacagccaggagagtagcagcatccagcaggtatatagcccag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctcagccttcttaggtacagccaggagagtagcagcatccagcaggtatatagcccag 500

                                                                       
Query: 301 cagcctctgaagacaaggggttgtccttttccttggctcctttccttggtctcctttcct 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagcctctgaagacaaggggtggtccttttccttggctcctttccttggtctcctttcct 560

                         
Query: 361 tggcagctctttct 374
           ||||||||||||||
Sbjct: 561 tggcagctctttct 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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