BAC Information

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BAC

Clone NameMSMg01-343K07
Chromosome1 (Build37)
Map Location 136,734,664 - 136,906,265
singlet/doubletdoublet
Overlap genePpp1r12b, Ube2t, Lgr6
Upstream geneOptc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2
Downstream genePtprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1, LOC100043064, Elf3, Rnpep, Timm17a, Lmod1, Tmem58, Ipo9, Nav1, EG215714, LOC623327, Csrp1, Phlda3, Tnni1, Lad1, Tnnt2, LOC100042477, Pkp1, 9830123M21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343K07.T7 (MSMg01no343_k07.b1)MSMg01-343K07.TJ (MSMg01no343_k07.g1)
ACCAG456903AG456904
length749751
length of high quality
(start - end)		452 (33 - 484)413 (69 - 481)
definitionCHROMAT_FILE: MSMg01no343_k07.b1 PHD_FILE: MSMg01no343_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:33 2005CHROMAT_FILE: MSMg01no343_k07.g1 PHD_FILE: MSMg01no343_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,734,664 - 136,735,111)(136,905,853 - 136,906,265)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTGAGCAT
ATCACCTGCCCCTAAAACAACCCAAATAAATCTCCCAACAGGCCATTTCT
AGCAACACATGCCTAAAATAAGCACCGTGGTGTACAGAGAACGCAGACCT
AAATCTGCGTACACTCTGAACTAAAACTTTAGCTTTCCTAACTTGATCTT
CCAAAAATAGGTCAACAGTGACACCCACTGTTACAGATGTACTTGGTCTA
CACCAAACTGTGCTCAGTTGTCTGAGTGCACTTTACCCTCTCCCAAGATC
AAATGGTTATTATCCTCTTAGTCTCTGAGCAGTAACTACTGGGAAAACCA
AACTTTTAAAACCTGGTTCAAGAAGGTGAAAATTCATAGCTAGGCTAAAA
CAACCAAACCTTCTGAAATGCTATATTGGCTTTTCTTTTTCTCTATTGTC
ATTTCCTGAGTAACTCTAGGAATCACACAGAGATGTGCCTACAACTACTG
TTCCCCCCTGGGATCATTGTAGCAGTATGACAGAGGTTAAGCCCCATGGT
AGAACTGGGTCGGAACGTCCCCTAAGAGAGAATGAGATTTATCCCCCCCA
ATGTGTACGTTTTCCGAATTTTTGGAGTATGCCATGTCTCTCCTTTCGTT
TTGCTCTTCATCTATCTTTTCTTTCTCTCTAATCTTTCTTTATATTTTTA
ATAAATCCTCTCTCTAACTTATTTTTACTCTCTTTATTTGTTTTACTTG

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCATGTTCAAGAAGCTTTCGTTCTGGTTGGGT
AGGAAGAAAAGAAATGACATGTGCCAATAAGTTCTACGAAGGCAAAGAAA
GCAGGAAGTCTCTTGTGTCATAAAAATCACTCCAAAACGTAGTGACCTAA
AGTACCACCTTATTATTTCTCGTGGCTTGGCTGGGCTCCCTGGGATCGTG
GAGGAGGCTGTAGTCACTGGAGGCTTAGAGAGGGCTAAAGGGTCTACCAC
AGCTCCTCTTACTTATCGGAAGCCCCACCACTGGCTGTCAGCGCATCCTC
TTGGTATAGCTCACCACTTGTGAGTCCCATTTGGGCCGCCTTACAAGCTG
CTGTGAGGATTCCTAGGTTGTGAAGGCAGAAGCTGCAAGACTTTATCACT
TAGGGCTAGGCCACACTATATTCCTTCTGTCTTGTATTGGTCACTGCCAT
CAACAAGGCCAGGCAAGTCTTCAGAGTGACACATCTTTATTCCTTATGAA
AAAATATAATTCCCCGTGTGGCAAAATCGAGAATTTTGAAAGGAGCTTAA
ACACCTTTAAAGGGGATATTTGATTTTTCTTTCTTTGTGACTGGTATAGG
ATCCCTTTTTTTTTACCCCCGTTTTTTTTTTTTTATCCTTTCATAACTAC
AAATGGTATCCGTTTCGGTTTTTGCTTCTAAATGTTTGTTTCAATTTTCC
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_k07.b1 MSMg01no343_k07.b1 CHROMAT_FILE:
MSMg01no343_k07.b1 PHD_FILE: MSMg01no343_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:33 2005
         (452 letters)



>mm_chr1_136734460_136735311
          Length = 852

 Score =  835 bits (432), Expect = 0.0
 Identities = 444/448 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgagcatatcacctgcccctaaaacaacccaaataaatctcccaacaggccat 64
           ||||||||||||| |  | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgagcagagaaactgcccctaaaacaacccaaataaatctcccaacaggccat 264

                                                                       
Query: 65  ttctagcaacacatgcctaaaataagcaccgtggtgtacagagaacgcagacctaaatct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttctagcaacacatgcctaaaataagcaccgtggtgtacagagaacgcagacctaaatct 324

                                                                       
Query: 125 gcgtacactctgaactaaaactttagctttcctaacttgatcttccaaaaataggtcaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcgtacactctgaactaaaactttagctttcctaacttgatcttccaaaaataggtcaac 384

                                                                       
Query: 185 agtgacacccactgttacagatgtacttggtctacaccaaactgtgctcagttgtctgag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agtgacacccactgttacagatgtacttggtctacaccaaactgtgctcagttgtctgag 444

                                                                       
Query: 245 tgcactttaccctctcccaagatcaaatggttattatcctcttagtctctgagcagtaac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgcactttaccctctcccaagatcaaatggttattatcctcttagtctctgagcagtaac 504

                                                                       
Query: 305 tactgggaaaaccaaacttttaaaacctggttcaagaaggtgaaaattcatagctaggct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tactgggaaaaccaaacttttaaaacctggttcaagaaggtgaaaattcatagctaggct 564

                                                                       
Query: 365 aaaacaaccaaaccttctgaaatgctatattggcttttctttttctctattgtcatttcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaaacaaccaaaccttctgaaatgctatattggcttttctttttctctattgtcatttcc 624

                                       
Query: 425 tgagtaactctaggaatcacacagagat 452
           ||||||||||||||||||||||||||||
Sbjct: 625 tgagtaactctaggaatcacacagagat 652


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no343_k07.g1 MSMg01no343_k07.g1 CHROMAT_FILE:
MSMg01no343_k07.g1 PHD_FILE: MSMg01no343_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:33 2005
         (413 letters)



>mm_chr1_136905477_136906289
          Length = 813

 Score =  799 bits (413), Expect = 0.0
 Identities = 413/413 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatgttcaagaagctttcgttctggttgggtaggaagaaaagaaatgacatgtgccaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 tcatgttcaagaagctttcgttctggttgggtaggaagaaaagaaatgacatgtgccaat 730

                                                                       
Query: 61  aagttctacgaaggcaaagaaagcaggaagtctcttgtgtcataaaaatcactccaaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 aagttctacgaaggcaaagaaagcaggaagtctcttgtgtcataaaaatcactccaaaac 670

                                                                       
Query: 121 gtagtgacctaaagtaccaccttattatttctcgtggcttggctgggctccctgggatcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gtagtgacctaaagtaccaccttattatttctcgtggcttggctgggctccctgggatcg 610

                                                                       
Query: 181 tggaggaggctgtagtcactggaggcttagagagggctaaagggtctaccacagctcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tggaggaggctgtagtcactggaggcttagagagggctaaagggtctaccacagctcctc 550

                                                                       
Query: 241 ttacttatcggaagccccaccactggctgtcagcgcatcctcttggtatagctcaccact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ttacttatcggaagccccaccactggctgtcagcgcatcctcttggtatagctcaccact 490

                                                                       
Query: 301 tgtgagtcccatttgggccgccttacaagctgctgtgaggattcctaggttgtgaaggca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tgtgagtcccatttgggccgccttacaagctgctgtgaggattcctaggttgtgaaggca 430

                                                                
Query: 361 gaagctgcaagactttatcacttagggctaggccacactatattccttctgtc 413
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gaagctgcaagactttatcacttagggctaggccacactatattccttctgtc 377


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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