BAC Information

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BAC

Clone NameMSMg01-343K23
Chromosome1 (Build37)
Map Location 169,933,628 - 169,933,972
singlet/doubletsinglet
Overlap genenone
Upstream geneC030014K22Rik, Uck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a, LOC100039879
Downstream genePbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343K23.T7 (MSMg01no343_k23.b1)MSMg01-343K23.TJ (MSMg01no343_k23.g1)
ACCAG456934AG456935
length791753
length of high quality
(start - end)		103 (38 - 140)388 (71 - 458)
definitionCHROMAT_FILE: MSMg01no343_k23.b1 PHD_FILE: MSMg01no343_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:36 2005CHROMAT_FILE: MSMg01no343_k23.g1 PHD_FILE: MSMg01no343_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCCGCTATACGACTCCTATATTCAGAGGATCCGCGGAATTCTTCTCTTT
ATCTCTGCTCTTAAAAATACAAAAAAAAAGAGAAGTTTTGTTTTGTGTTC
TTTTTTGGTTTTGTTTATTTGGGGGGGGGGTGCTCCCTTTCCCCTGCTCC
CNTAGCGCTTCTTTATTCTTATAATCCTCCCCATGCTCCATTCTAAATCA
TATAAACACCACCACCATCTATTTCTTACCCATACCATATCTTTCCCTCA
CCATACTTCACTAACCCATAAATTACAATATCACAAACCCCTCATTCCCC
CAATTTTTTTTATTCTCAACCCATCCAATTACCCAATCAACTATCATTTC
ACCTATCTCACCACCAATCCCACCCTTCACACCCTATTCCCTCATCTAAT
TCCCCTCCCCTCCACAATTTTAAACACACACCCCTTCTTAACCCCTATCT
TCTTTACATCCCCCCCACCCCATACTCTTTCCCTTTTCTTTCCTCTCACC
CCACTCTATCCTCCAATCTCTCTAAATATCCCCCTACATCATACCTTACA
CTATTTCACACTCCCATCTTCTCTCCCTTATACACCTTTCCTCCTTCACC
ATCTATTTTCCCCCCCAATCTCTCCACTCTTCATTTCCCCCCATTTTTCC
TTTCCCTAAACTCCTAATATTCTCCAAATCTCATATACTTATCCTCTATT
TCTACCTCCCCACATTACACTTATTTACCCATCCATCACTCTCTAATTCT
TTCACCACACCCTACCCACATTACCTCTATCCTTACTACCC

TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTCCTGTTTAAGACCATCACAGTTTCTCTT
CTGTTTGAAAACAACAACAACAACAACAACACCCAGTAACTCATCCCTGG
ATCCTTCTCCTTTAGCTCTTGTTTATTCAGAGCAATCTCACCTTGCTTAA
AAAGAAAATGAGAGGATTGGGAGTACAGTCTGGGTGCGACTCAAACAACA
TCTGGTCTGCACTGGACTTCATTTAGGGCTTAAGGTTGATAGCTACTTCA
TCATGATGCTCCAATTCTTTCTTATCTATCTATATATCTATCTATCTATC
TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTACTTTACAT
CCGGATCTCACCCCCTCCCATTTCCCCCTTGCCCAACTCCTGCCCCTCCC
ACCTGTGGGAAGCCACATGTGCCGTTGCAGGGTGGCGCTGGCTACCACTG
GGCCACACACATAAATTTGGGCAAACAACCATGTGTAAAAATTGAGGAAA
GTTTTTTGCCAAAAAAATGCCTGGCCCCGGCTTGAAAATGAGGAAAGTTA
TTGAGGTTTTGTGGAGGGATTGAAGAAAAAAAACCATCCACATAGGGAGA
CCGGCCCGGAGGGTAAAAACTAAACAAACCCGGGGTTGAAAATGCCCCCC
CCTCCCCCAATTAAAAAACCAGATTTTGGGTTCAGGGGCTTTTCCCCTCG
CAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_k23.g1 MSMg01no343_k23.g1 CHROMAT_FILE:
MSMg01no343_k23.g1 PHD_FILE: MSMg01no343_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:37 2005
         (388 letters)



>mm_chr1_169933425_169934212
          Length = 788

 Score =  569 bits (294), Expect = e-166
 Identities = 344/388 (88%), Gaps = 43/388 (11%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcctgtttaagaccatcacagtttctcttctgtttgaaaacaacaacaacaacaacaac 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 204 ctcctgtttaagaccgtcacagtttctcttctgtttgaaaacaacaacaacaacaaca-- 261

                                                                       
Query: 61  acccagtaactcatccctggatccttctcctttagctcttgtttattcagagcaatctca 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 -cccagtaactcatccctggatccttctcctttagctcttgtttattcagagcaatctca 320

                                                                       
Query: 121 ccttgcttaaaaagaaaatgagaggattgggagtacagtctgggtgcgactcaaacaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttgcttaaaaagaaaatgagaggattgggagtacagtctgggtgcgactcaaacaaca 380

                                                                       
Query: 181 tctggtctgcactggacttcatttagggcttaaggttgatagctacttcatcatgatgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctggtctgcactggacttcatttagggcttaaggttgatagctacttcatcatgatgct 440

                                                                       
Query: 241 ccaattctttcttatctatctatatatctatctatctatctatctatctatctatctatc 300
           |||||||||||||||||||||||                                     
Sbjct: 441 ccaattctttcttatctatctat------------------------------------- 463

                                                                       
Query: 301 tatctatctatctatctatctactttacatccggatctcaccccctcccatttccccctt 360
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ---ctatctatctatctatctactttacatccggatctcaccccctcccatttccccctt 520

                                       
Query: 361 gcccaactcctgcccctcccacctgtgg 388
           ||||||||||||||||||||||||||||
Sbjct: 521 gcccaactcctgcccctcccacctgtgg 548


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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