BAC Information

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BAC

Clone NameMSMg01-343L01
Chromosome1 (Build37)
Map Location 151,504,615 - 151,504,942
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042792, LOC435647
Downstream geneLOC100042813, Pla2g4a, Ptgs2, LOC676712, LOC100043257, LOC100043261, Pdc, BC003331, Tpr, EG625534
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343L01.T7 (MSMg01no343_l01.b1)MSMg01-343L01.TJ (MSMg01no343_l01.g1)
ACCAG456938AG456939
length786775
length of high quality
(start - end)
266 (40 - 305)328 (69 - 396)
definitionCHROMAT_FILE: MSMg01no343_l01.b1 PHD_FILE: MSMg01no343_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:37 2005CHROMAT_FILE: MSMg01no343_l01.g1 PHD_FILE: MSMg01no343_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCA
CCTGATTACACCAAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCC
TTAATCATCAGAGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCAC
ACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGC
GTGGATGTGGAGAAAGAGGAACATTCCTCCATTGTTGGTGGGATTGCAGG
CTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGA
CATAGCACTACCGTATTTTTTTTGCAATACCTCTCCTGGGCATTTATCCA
GAAGATGTCCCTACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGC
AGCCTTTATTTATAATACCCCATAATCTATCTAAGAACCTTTTATGCCCC
TCCTTATGACTATTGGCATTAGATACATGTGCCCTTTTCTCACTCCTTGC
TAGCATTATCCCCGCTTCTTATAAGAGTATCGTACGTTATTTTAGTTACT
TATACCTCCCGTTATCGGTTTCTACTATGTACTCTTTTTCGACTTGCTCT
TTTTTTTTTTCTCCATTTATTTTCTCTTTATTACTCTCCTCCCATGTTGT
CTTCTTTATCTTTGTCACTACCCCCCCATTCTGTTCACTTCTTACTATGT
TTAATCACTTCTCTTATTCTTCTCTTCACTTCTCCTCCTATATTTCTTTT
TCTCTCAGTTTTTTGCATCCCCCTTTCGTTCCTCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGCACAGATAGAAAGCAAATGACTACAGAAAG
CAACCAGAGCCAAGTTTGAGATGAACGAAAGTATCATCCAACAGCTGGCA
AAGGAAACCTGAGACTCTAAGAAATCAAAATGGGGTATTCAGTGGAACAC
ATATGCCTGAGTAGGTACTGTATGAGCCACTTTGTATGGGTGGAAGTTTA
TTTATGTAACACATATAACATATTTAAATAATTATATACTATAAGTTGTA
CTGGACCTTGAATGAGATTGGATGAGACAGTTGAAAATGACCATTGGCAA
AAAAATTACAAAATGTTGTGATGTATACAATAACCAACCATGATTGTGCC
AGGAGAAGCCAGTTTTAGCTGGTCTTTACTTNCCCNNTTTTTCCCACTTA
TTTTTTTTCTCCTTTATCATTTTTCTTTTTCTCCTCCATTTATTTCCCTT
CTCTTCTTTTTTCTTTCTTTTTTTTTTCCTACTTCGTTACCCTCTTTTTC
TTATCCTTCCAATTTTACCACTCCACAACTCCTACCCCTCTCTTTTTTTT
TCTTCCTGAATTTTTTTGCTCTAGCCTCTCTTTTCTGCCACTTTCTCCTT
TTTCCTATTGCTCCCTTTCTGTCCCTTCGTCCTTCTCTTATCTTGTCTTT
CGCTGTCCGCGTCTTTCATTTTACATATCTTTTCCCCGCACCCCCATTAC
TTTCCTCCTTCATTCATCTCCTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_l01.g1 MSMg01no343_l01.g1 CHROMAT_FILE:
MSMg01no343_l01.g1 PHD_FILE: MSMg01no343_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:37 2005
         (328 letters)



>mm_chr1_151504415_151505142
          Length = 728

 Score =  627 bits (324), Expect = 0.0
 Identities = 327/328 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcacagatagaaagcaaatgactacagaaagcaaccagagccaagtttgagatgaacga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 agcacagatagaaagcaaatgactacagaaagcaaccagagccaagtttgagatgaacga 469

                                                                       
Query: 61  aagtatcatccaacagctggcaaaggaaacctgagactctaagaaatcaaaatggggtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 aagtatcatccaacagctggcaaaggaaacctgagactctaagaaatcaaaatggggtat 409

                                                                       
Query: 121 tcagtggaacacatatgcctgagtaggtactgtatgagccactttgtatgggtggaagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tcagtggaacacatatgcctgagtaggtactgtatgagccactttgtatgggtggaagtt 349

                                                                       
Query: 181 tatttatgtaacacatataacatatttaaataattatatactataagttgtactggacct 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tatttatgtaacacatataacgtatttaaataattatatactataagttgtactggacct 289

                                                                       
Query: 241 tgaatgagattggatgagacagttgaaaatgaccattggcaaaaaaattacaaaatgttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tgaatgagattggatgagacagttgaaaatgaccattggcaaaaaaattacaaaatgttg 229

                                       
Query: 301 tgatgtatacaataaccaaccatgattg 328
           ||||||||||||||||||||||||||||
Sbjct: 228 tgatgtatacaataaccaaccatgattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)