BAC Information

Click to search

BAC

Clone NameMSMg01-343P19
Chromosome1 (Build37)
Map Location 163,296,009 - 163,296,320
singlet/doubletsinglet
Overlap genenone
Upstream geneRabgap1l, Gpr52, EG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6
Downstream geneTnfsf4, Tnfsf18, EG435650, LOC100039623, LOC269134, Fasl, AI848100, EG665109, Pigc, Dnm3, LOC100039703, Dnm3os
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343P19.T7 (MSMg01no343_p19.b1)MSMg01-343P19.TJ (MSMg01no343_p19.g1)
ACCAG457160AG457161
length778770
length of high quality
(start - end)		343 (67 - 409)417 (61 - 477)
definitionCHROMAT_FILE: MSMg01no343_p19.b1 PHD_FILE: MSMg01no343_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:02 2005CHROMAT_FILE: MSMg01no343_p19.g1 PHD_FILE: MSMg01no343_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGCTATACGACTCACTATAGTTACCGACGAAGGCGGAATCCAGACAAAT
TGACCAAAAATACAGCTTTTAGAATACAGCTCATGGGGCTGGAGAGATGG
CTCAGTGTTTAACAATGGGCACTACTCTTGGTCAGGGTCCAGGTTCAGGT
CCCAGAGTCCACACTGAGTGGCTCACAATTACTCCTAACTCTAACTCCAG
ATCCAGAGCACCTGGTTCTCTCTTCTGGGCTCCCTGGGCACTTGCACACA
TGTGGTACACACAAACACACACTCAGGTGAACACACACACACACACACAC
ACAAAGAAAATATTTTTTATAGAACAACTCATTTCTACATTGAACTTACA
GTTTTCAGTCTTTCCTTCTCCCCTCTGACAATACATAGCTGTGATGGAGT
AATAGACACCCCCCGCCGGTTTAAACAGATACTAATTTTAAAAAGGAAAT
ATTTTCTTCAGAATTGGAATACTTTGGACTTTTTTATCATAGTCTTCGGA
ATCACTGATATACTGTGCATGTACTTTGTCAAGCTTGAAACCAGACAGGT
TGAGTCTCCATCAGTTTACGCTGGCGGAAGGACATTTTATAAGGGTTCAC
GTTCTTTCTCTTCTCTCTTGTTTATTCTCCTTATCCCCCCAAGCCGATAC
ATTTTTTTTATTTCTCTAAGCCCTTCAATTCACTTACCGCCTTTCTCCCT
TCAATCTAATAGTAATATTTTTCTTAATCTATCACTTCATCTATTACTTC
CATTTTCTCCTTCTCCGTTCTCTTTTGT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCTTCACAAGGAAATAGGGAACAGAATTCTCTTAGTGAAAT
GAATAACGTGAGTCTTCAAAGGTAAGTAGCAGTCCATGTGGGACTATAAC
CACAGAAGAATGTAAAGAGAGAGAGAGGTGGTGTTGCTGGGTTTGAAGAT
GGAGGAAGAGGCAGGAGCCAATGAACTTGGGTCACCCTAAGAAGTTAAAA
TGCACAATTCTGGGTCGAGTCTCTAGAAGGAAAGATGTCCTTCACGTGCT
TTGATTCAGCCCAGTGGGACTCAAGGCAAAGTTTTTCCATTGTGTTCTTT
TGGGCCACTGGGTCTATGGTAAATTCCTCATTTTGGCAGCTCCAAACTAA
GTATGCATCTATATCGACCCCAAATCAAACCATGGAAAGCAAATCACAGC
CTCCTCCTAATGGAAGTGTTTCCTTGTCCATGTNACACGCCCCCCCCATC
ACTGTCCTCTCACTGTTTCCTCACAACTGTGAAACAACTAACAGTGGTGG
ATCTCTCTCTGGTGACTCCCCCCCCCAGGAAAATTCTAGAATTTTCCACT
CCTTCCCTGTCCCGGGTTTCTCCTTCCCCCGGGCTTTGTTTCCTTCCTTT
CCCCCTCCTCGGGTTCTGTTTTTGTAATTGGCTTTCCCCCCTCCTCCTCT
TTACCATTTATACTCTCGCCTTCATGTTTAGTTTTTTCCCCGTGATCTTC
TGTCCCTATAAATTAATCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_p19.g1 MSMg01no343_p19.g1 CHROMAT_FILE:
MSMg01no343_p19.g1 PHD_FILE: MSMg01no343_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:02 2005
         (417 letters)



>mm_chr1_163296009_163296825
          Length = 817

 Score =  603 bits (312), Expect = e-177
 Identities = 312/312 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcacaaggaaatagggaacagaattctcttagtgaaatgaataacgtgagtcttcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cttcacaaggaaatagggaacagaattctcttagtgaaatgaataacgtgagtcttcaaa 253

                                                                       
Query: 61  ggtaagtagcagtccatgtgggactataaccacagaagaatgtaaagagagagagaggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggtaagtagcagtccatgtgggactataaccacagaagaatgtaaagagagagagaggtg 193

                                                                       
Query: 121 gtgttgctgggtttgaagatggaggaagaggcaggagccaatgaacttgggtcaccctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 gtgttgctgggtttgaagatggaggaagaggcaggagccaatgaacttgggtcaccctaa 133

                                                                       
Query: 181 gaagttaaaatgcacaattctgggtcgagtctctagaaggaaagatgtccttcacgtgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 gaagttaaaatgcacaattctgggtcgagtctctagaaggaaagatgtccttcacgtgct 73

                                                                       
Query: 241 ttgattcagcccagtgggactcaaggcaaagtttttccattgtgttcttttgggccactg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  ttgattcagcccagtgggactcaaggcaaagtttttccattgtgttcttttgggccactg 13

                       
Query: 301 ggtctatggtaa 312
           ||||||||||||
Sbjct: 12  ggtctatggtaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |