BAC Information

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BAC

Clone NameMSMg01-344A02
Chromosome1 (Build37)
Map Location 176,952,228 - 176,952,728
singlet/doubletsinglet
Overlap genenone
Upstream geneIfi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2, Grem2
Downstream geneRgs7, Fh1, Kmo, Opn3, Chml, Wdr64, Exo1, Gm104, Pld5, B020018G12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344A02.T7 (MSMg01no344_a02.b1)MSMg01-344A02.TJ (MSMg01no344_a02.g1)
ACCAG457174AG457175
length722823
length of high quality
(start - end)		668 (49 - 716)---
definitionCHROMAT_FILE: MSMg01no344_a02.b1 PHD_FILE: MSMg01no344_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:03 2005CHROMAT_FILE: MSMg01no344_a02.g1 PHD_FILE: MSMg01no344_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GAGTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCATATTATTCTTTCATATGTACTTACTGTTTTACAAATATAT
AAGACTTTTCTGTGTATTTGGTTAACCGCCCCTTTCTCTACCCCCTCTCC
ACTTAACCTTCCCTCCCCAGCCCCCCCACTTTTACTTTCAGATCACATAT
GGTCTACTAATCCCTTCCCTGAAAGCATCTTCACAACTCTAATGCCCCCT
TCTAGCTTCTGAGCCTCGGCAGGTTCTCCAAGCAAAAGGTACACATATGA
AATTTCAATGCTATGATCTATAAAAAGCAGTTTCAAAAAAATAGAGTCCT
GACTACCTTTCAATGGGCCAGAAGATGTCATCAGGTGTGAAGTCATCAAT
GCTCTTACCAGCCTTTGAACACTGCAAGCTGCAATGTCAACCTGTCAGAC
GAGATGAACCCAATGGTGAGCTAGTGTTGTAACTGCCATGGGAAGACCCA
ACCACTTTCTGATTGGAATTTTAGGCCTTTTCTGCAAGAAGAAGCCATAC
TTGGTACTGTAAAACTGATGAAAATCCCATAACTGGAAGGTACAGGCTTT
AGAGAGGACCCTGCTAGTATTGTTTACTTAGTGAACACGGTGTCATAGTG
CCTTCTAAATGTTTATGCTCATACCTATAGATTGGTTCTGTTCTCACCCT
TGGTTAGAGGAGCTTGTAGTGG

TTTTTTTTTTTTTTTNCTNTTTTTCTTATCTTCCCATTNNNNNTTTTGTC
TTAGGAATTTTTATCCCCCTACAGCATAGCCTATTAGAAATATTAAAACA
TTGCTACTACTTTTATCTTTTCCCTCTCTTATTCTTCTTTTTTTTTTCTT
AGTAGTTATTTTTTTTCTCTCTGCCCCCCTTCTTTTGTCAAAAAAGCAGC
TCTCTCCAGCATCCACCTATTNNGNNNNGNNNTGTGNCCCAAATGACTAG
TGTTGTTAGGCCCCTGGGTCCGGGCCCGCCCCTTGGGNCCCTTCTCCCNA
CATTTTAGGGTGAACAATTANTNAGNNAAGGGTATTCTTCGCCGGGNAAA
TTTCCCCTGAATTTCCNTCCNTNTAACCCCTTAANCTTTCCTTTTCCCCA
CCCCCTTTTCTTGNTTGAATTTTAAAGGGGGAAAGGTTGGTGGCCTCCAT
TCCCACCCACCCCCCAAATTTTTAAGAAGAAAAACTCATTAAAGCCGAAA
ACCTGGGGTGGAATCCTAACCCTCCAATCCTAATTGGAATTAAACCTTTG
CGGGGGGGTTAAGGCCCAAAAACCCCTCTCCCTCTTCCGACATTTTGTCT
ATTTATTTCGCCTCTCTCTTTCGCTCTCTCAAACAATAATTAGCCATTTA
ATAATCTGTGCCCCATTTGTGATCTTCTCTGCGCCCCCCTAAAAAACCTC
CCCCCTCCACCCTCTCCTGCNGAGTCGCCTTTTATTATCTTCTATTTTTC
ATCTTCAAAGAACATCTCCTATTTATTATAACAAAAAACANATTATACCA
TCCTGCCCCGCGCGCCCACCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_a02.b1 MSMg01no344_a02.b1 CHROMAT_FILE:
MSMg01no344_a02.b1 PHD_FILE: MSMg01no344_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:03 2005
         (668 letters)



>mm_chr1_176952228_176953296
          Length = 1069

 Score =  946 bits (489), Expect = 0.0
 Identities = 498/501 (99%), Gaps = 1/501 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatattattctttcatatgtacttactgttttac-aaatatataagacttttct 63
           |||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 gaattccatattaccctttcatatgtacttactgttttacaaaatatataagacttttct 442

                                                                       
Query: 64  gtgtatttggttaaccgcccctttctctaccccctctccacttaaccttccctccccagc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtatttggttaaccgcccctttctctaccccctctccacttaaccttccctccccagc 382

                                                                       
Query: 124 ccccccacttttactttcagatcacatatggtctactaatcccttccctgaaagcatctt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccccccacttttactttcagatcacatatggtctactaatcccttccctgaaagcatctt 322

                                                                       
Query: 184 cacaactctaatgcccccttctagcttctgagcctcggcaggttctccaagcaaaaggta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacaactctaatgcccccttctagcttctgagcctcggcaggttctccaagcaaaaggta 262

                                                                       
Query: 244 cacatatgaaatttcaatgctatgatctataaaaagcagtttcaaaaaaatagagtcctg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacatatgaaatttcaatgctatgatctataaaaagcagtttcaaaaaaatagagtcctg 202

                                                                       
Query: 304 actacctttcaatgggccagaagatgtcatcaggtgtgaagtcatcaatgctcttaccag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actacctttcaatgggccagaagatgtcatcaggtgtgaagtcatcaatgctcttaccag 142

                                                                       
Query: 364 cctttgaacactgcaagctgcaatgtcaacctgtcagacgagatgaacccaatggtgagc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 cctttgaacactgcaagctgcaatgtcaacctgtcagacgagatgaacccaatggtgagc 82

                                                                       
Query: 424 tagtgttgtaactgccatgggaagacccaaccactttctgattggaattttaggcctttt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  tagtgttgtaactgccatgggaagacccaaccactttctgattggaattttaggcctttt 22

                                
Query: 484 ctgcaagaagaagccatactt 504
           |||||||||||||||||||||
Sbjct: 21  ctgcaagaagaagccatactt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1069
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1059
Effective search space:   696822
Effective search space used:   696822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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