Query= MSMg01no344_b09.b1 MSMg01no344_b09.b1 CHROMAT_FILE:
MSMg01no344_b09.b1 PHD_FILE: MSMg01no344_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:10 2005
(258 letters)
>mm_chr1_57880204_57880861
Length = 658
Score = 451 bits (233), Expect = e-131
Identities = 246/255 (96%), Gaps = 8/255 (3%)
Strand = Plus / Minus
Query: 4 ggaattctaataaatcatcatagataagaaatgctcgcttaccaagaaaaaaaactgggt 63
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ggaattctaataaaacatcatagataagaaatgctcgcttaccaagaaaaaaaactgggt 289
Query: 64 gagtcattcaaaatcacaggcataaataccctgttagtgtgggcttaagtcagtctgtaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gagtcattcaaaatcacaggcataaataccctgttagtgtgggcttaagtcagtctgtaa 229
Query: 124 ataggaatataatataggaacactcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 183
||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 228 ataggaatataatataggaacactc--------gtgtgtgtgtgtgtgtgtgtgtgtgtg 177
Query: 184 atacatgtgtgcagtcaatgtgtgtcctcatgtgtggggtgtgggggtagcattccaatg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 atacatgtgtgcagtcaatgtgtgtcctcatgtgtggggtgtgggggtagcattccaatg 117
Query: 244 cacacacatgcagag 258
|||||||||||||||
Sbjct: 116 cacacacatgcagag 102
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 658
Length adjustment: 9
Effective length of query: 249
Effective length of database: 649
Effective search space: 161601
Effective search space used: 161601
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no344_b09.g1 MSMg01no344_b09.g1 CHROMAT_FILE:
MSMg01no344_b09.g1 PHD_FILE: MSMg01no344_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:10 2005
(501 letters)
>mm_chr1_57700545_57701445
Length = 901
Score = 946 bits (489), Expect = 0.0
Identities = 501/511 (98%), Gaps = 10/511 (1%)
Strand = Plus / Plus
Query: 1 aataaaaagagatcctaagcaaatgaaatattgtttccctttctgtctagctctagtcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataaaaagagatcctaagcaaatgaaatattgtttccctttctgtctagctctagtcct 260
Query: 61 ctccagtctgccagagcgttaactgcttgtctgctgcaccagaagacagaatcctatcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctccagtctgccagagcgttaactgcttgtctgctgcaccagaagacagaatcctatcta 320
Query: 121 ggatttgcccgccaagagtctttcaagcatctcagttgtctagtgtgatagtgtgggaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggatttgcccgccaagagtctttcaagcatctcagttgtctagtgtgatagtgtgggaca 380
Query: 181 caggaagctgaaccgaacacaaagatgacagggaaatgtgaaaaagctattagttcctat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggaagctgaaccgaacacaaagatgacagggaaatgtgaaaaagctattagttcctat 440
Query: 241 atgtttgcaattatccatatagagtcagagacattagatttttaaatagtctccgtgttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtttgcaattatccatatagagtcagagacattagatttttaaatagtctccgtgttt 500
Query: 301 acatttacacatgcttatgtgcattttgtccaggggggaaacccatagtgatcatgagag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acatttacacatgcttatgtgcattttgtccaggggggaaacccatagtgatcatgagag 560
Query: 361 tttaaaaggatgcttatggcccatgacactaaaacctgtatcactatagcatttatttct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttaaaaggatgcttatggcccatgacactaaaacctgtatcactatagcatttatttct 620
Query: 421 aacaactttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt------- 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacaactttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttg 680
Query: 474 ---tacaattagagaggatgcattttctgtt 501
||||||||||||||||||||||||||||
Sbjct: 681 tgttacaattagagaggatgcattttctgtt 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
