CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTAACGCCATGTTTTTGTTATTAATTTTTCTTCTATAAATAGACTG
ATGATGGAGGATGGATGGATGGATGGTTGGATAGATATTTACCCTCCCCC
CTCCTTCCCCCCCCCCCCTCCCCCCCCTTCCTGCCACGCCACTTTAACCC
CATCCTCCTCCTATCCCTTCCCCCCCCCCCCTCTCCACCACCCCGCCTCC
CTTCCCTTCCGTACTCCCCCCCCCCCCCCCCGCCCCTCCTTCCCCCCCCC
CCCCTCCCCTCCCCCCCTCCCTTTTTTTTTTTTTTTCTCTCCTCAGCCCC
TCTCCCGCCCCCCCCCCCCTCCTCCCCTCCCTCTCTCTCCCCCCTCCTCT
CCTCCCTTCCTTCCTCCCTGACCACCCCCCCCCCCCCCCTTTCCTCCTCC
TCCCTCCTCCCCTCCTTCCCCCCTCCCTCCCCCCTTCCCCCTTTTCCCTT
CCCCCCCTCCCCCCCTTCCCTTACCCCCTCCTCCCTCTCTTCCCCCCCCC
CCTCCCCTCCTCCCTCTTCCCAACTTCTCTCTCCTCCTCCCCCCCCACCC
CCCCTCTCCCCCTCCCTCTCTTCTCCCCCTCCCCCCTCTCCCCTCCTCCC
CCTCCCCCCCTCTCCCTTCTCCCCTCCTCCCCCCCTCCCTCTCCTCCCCT
CCCTTCTCTCCCATCCCTATCTTCTCCCCCCTCTCCACCTCCTCCCATTC
TTCCCTCCCCCCTCCTCCCCTCCACCCCTCTCCTCCCCTCTCTCTTCCTT
CCACCCTCTCTTCCTCCTTTTCCTTTCCTCTCCACTTCTTCATTTCCCCT
CTCCCTCTACTCCTCTCG

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGTTCCCTTTACTGAGGTTGCAGGGGA
TGGGGCACTAGGTTACAGCTGGGTAGCCAGAGGGATCCCAGCCTGTTCCT
GTCAGTAGGGCAACCACAAAGAACAGGAATGCAATGCACATTTCAGAAAG
CTAGCAAGGATTTTAAAGCTTTCACCATAAACGAGACAAGTTTTCAAGGA
GATTTGTTTAGCCTAGATTAGATAATGCCAATGTATGCAAGTAGCCTATT
GGTATATATTGATATGTAGAATGTCATGCTGCTATCCATCAGATAAAAAC
AAGGTGAAAGAGAACTTGTAGACAGTGGCTGACATTGGAATGAGCAGCCA
GTGTGGAATAGACTCTCCAGGTTTGGGTAATAGACACTCATAATCAAGTA
CCATCGGGGCTTTTGTGAGGATTTCCTGATAATGTCCAGGCAAAGGAAGA
TCTGCTGCTGATGGTTGTGTCTTCCCAGAGGTCCTGATGTGCTTAGGAAG
ATGAGTCACCCTTATAAATACTCATGTGAAGCATTTTCTATATTATTTAT
ATTATATTTATATATATTATATATATACTTATATTATAAATACTCATGTG
AAGCATTTTCTATTTTATTTACTAACATTACTTAATTTTTCTATTTTAGA
CAGGAGTCAAGCCCCAGTGGCAGCAGACTGCTCCATCATTCCTN

Query= MSMg01no344_c12.g1 MSMg01no344_c12.g1 CHROMAT_FILE:
MSMg01no344_c12.g1 PHD_FILE: MSMg01no344_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:15 2005
         (606 letters)



>mm_chr1_46511774_46512779
          Length = 1006

 Score = 1108 bits (573), Expect = 0.0
 Identities = 598/607 (98%), Gaps = 3/607 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgttccctttactgaggttgcaggggatggggcactaggttacagctgggtagccagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgttccctttactgaggttgcaggggatggggcactaggttacagctgggtagccagag 260

                                                                       
Query: 61  ggatcccagcctgttcctgtcagtagggcaaccacaaagaacaggaatgcaatgcacatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggatcccagcctgttcctgtcagtagggcaaccacaaagaacaggaatgcaatgcacatt 320

                                                                       
Query: 121 tcagaaagctagcaaggattttaaagctttcaccataaacgagacaagttttcaaggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagaaagctagcaaggattttaaagctttcaccataaacgagacaagttttcaaggaga 380

                                                                       
Query: 181 tttgtttagcctagattagataatgccaatgtatgcaagtagcctattggtatatattga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 tttgtttagcctagattagataatgccaatgtatgcaagtagcctattggtatgtattga 440

                                                                       
Query: 241 tatgtagaatgtcatgctgctatccatcagataaaaacaaggtgaaagagaacttgtaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 tatgtagaatgtcatgctgctatccatcagataaaaacaaggtgaaagagatcttgtaga 500

                                                                       
Query: 301 cagtggctgacattggaatgagcagccagtgtggaatagactctccaggtttgggtaata 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 cagtggctgacattggaatgagcagccagtgtggaatagactctctaggtttgggtaata 560

                                                                       
Query: 361 gacactcataatcaagtaccatcggggcttttgtgaggatttcctgataatgtccaggca 420
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 gacactcataatcaagtaccatcggggcttttgtgacgatttcctgataatgtccaggca 620

                                                                       
Query: 421 aaggaagatctgctgctgatggttgtgtcttcccagaggtcctgatgtgcttaggaagat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaggaagatctgctgctgatggttgtgtcttcccagaggtcctgatgtgcttaggaagat 680

                                                                       
Query: 481 gagtcacccttataaatactcatgtgaagcattttctatattatttatattatatttata 540
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 681 gagccacccttataaatactcatgtgaagcattttctatattatttatattatatatata 740

                                                                       
Query: 541 tatattatatatatacttata-ttataaatactcatgtgaagcattttctattttattta 599
           |||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tatattatatatata--tatacttataaatactcatgtgaagcattttctattttattta 798

                  
Query: 600 ctaacat 606
           |||||||
Sbjct: 799 ctaacat 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)