NNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACAATTTCTCCTATATTCTTCCTGAACGATGGTGAGAAGTA
ACCAATGAAAGACTGATGTCACCAGAATTTGCCTTTCAGCGAATGCTTTG
TAAGAGAGCTTGAGAACAGTGTGTCAAAGATATAAATACAGAGAACATTG
CAGTTCTGTTCAGAAAACTATGTAAAGAAAAGTAGAACAGAGGTCAGGAG
GTCATATCAATAAAGACATCCAGAGGTGGTATATATACAGAGGAAACTCA
GAAAGAAAATTATGGAGTAGCCATGGTAGGAGAACAAAAGAGCACATGAG
TCAAAAGTATTGTAATGAAGTCTGTTGAGTTCATTAGCTATCAAGGTTAT
GCAGAATGTATATTATGCCTATTCTAGTATTTCTGGAATTTGGTTATGTT
ATTTTTTTGTTATTTGGGGTTAGTAAAGAAACCATTAGGATTGTAAACAG
AACAATAGGAAGAGAAATATCTGAGATTGCACAGTTTATGTCTAAAGAGA
CCTTATTAAAAATTGCATAGCTAACGAGGTATGTTACCTGTTGGCCAGTG
CTTCAATGTCTCTAGAAACTGAAAGGAACATTGCAAGTGCCCAGGTTTGG
CCATGTGGAAAGCAAACCTTCTTTTTTTGGCCCCGGTCCCTTAGGGGGAC
ACTTGGCTTGATTTTTCTTTTTTTTCAAAATTTTGTTTATTTTATTGCCT
TCGGGAATATTACATCTCTTCTGCGACATTG

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCATGAATGGGT
GTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTGG
TTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCG
TATATTAAACCATCCCTCCATCCCTGGAATAAAACCTACTTGGTCAGGAT
GGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTA
AGGATTTTTGCATCAATATTCATAAGAGAAATTGGTCTGAAGTTCTCTAT
CTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCAT
AAAATGAGTTGGGTAGAGTATCTTCTACTTCTATCTTGTGAAATAGTTTG
TGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACT
AAACCCGTCTGGTCCTGGGCTTTTTTTGGCTGGGAGACAATTAATAACTG
CTTCTATTTCTTTAGGGGATATGGGACTGTTTAGAAGGTCAACGTGATCC
TGATTCAACTTTGGTACCTGGTATCTTTCCAGAAATTTGTCCATTTCGTC
CAGGTTTTCCCAGTTTGTTGAGTATACCCTTTTGAAAAAGAAATTGACGG
GTTTTGGCATTCTTTAGGATCTGGTGTAATGTCCCCCTCTTCATTTCTCA
AATTTTAGA

Query= MSMg01no344_d20.b1 MSMg01no344_d20.b1 CHROMAT_FILE:
MSMg01no344_d20.b1 PHD_FILE: MSMg01no344_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:21 2005
         (472 letters)



>mm_chr1_151101513_151102384
          Length = 872

 Score =  849 bits (439), Expect = 0.0
 Identities = 466/481 (96%), Gaps = 11/481 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   atattcttcctgaacgatggtgagaagtaaccaatgaaagactgatgtcaccagaatttg 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 583 atattcttcctgaacgatggtgagaagtaaccaaagaaagactgatgtcaccagaatttg 524

                                                                       
Query: 61  cctttcagcgaatgctttgtaagagagcttgagaacagtgtgtcaaagatataaatacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 cctttcagcgaatgctttgtaagagagcttgagaacagtgtgtcaaagatataaatacag 464

                                                                       
Query: 121 agaacattgcagttctgttcagaaaactatgtaaagaaaagtagaacagaggtcaggagg 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 agaacattgcagctctgttcagaaaactatgtaaagaaaagtagaacagaggtcaggagg 404

                                                                       
Query: 181 tcatatcaataaagacatccagaggtggtatatatacagaggaaactcagaaagaaaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tcatatcaataaagacatccagaggtggtatatatacagaggaaactcagaaagaaaatt 344

                                                                       
Query: 241 atggagtagccatggtaggagaacaaaagagcacatgagtcaaaagtattgtaatgaagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 atggagtagccatggtaggagaacaaaagagcacatgagtcaaaagtattgtaatgaagt 284

                                                                       
Query: 301 ctgttgagttcattagctatcaaggttatgcagaatgtatattatgcctattctagtatt 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 283 ctgttgagttcattagctatcaaggttatgcagaatgtatattatacctattctagtatt 224

                                                                       
Query: 361 tctggaatttggttatgttattt---------ttttgttatttggggttagtaaagaaac 411
           |||||||||||||||||||||||         ||||||||||||||||||||||||||||
Sbjct: 223 tctggaatttggttatgttatttatttattttttttgttatttggggttagtaaagaaac 164

                                                                       
Query: 412 cattaggattgtaaacagaacaataggaagagaaatatctgagattgcacagtttatgtc 471
           |||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||
Sbjct: 163 cattaggattgtaaacagaacaatagaaagagaaatatctgagattgca--gtttatgtc 106

            
Query: 472 t 472
           |
Sbjct: 105 t 105


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)