Query= MSMg01no344_g18.b1 MSMg01no344_g18.b1 CHROMAT_FILE:
MSMg01no344_g18.b1 PHD_FILE: MSMg01no344_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:36 2005
(543 letters)
>mm_chr1_61243262_61244201
Length = 940
Score = 1004 bits (519), Expect = 0.0
Identities = 533/539 (98%), Gaps = 3/539 (0%)
Strand = Plus / Minus
Query: 5 gaattcttagatatgttaaggaaaatgttaagaaaacaaaataatgccttctgtctaagc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gaattcttagatatgttaaggaaaatgttaagaaaacaaaataatgccttctgtctaagc 681
Query: 65 aatgtgaaatggcagaaatactaatgaaaggtgtgacattttaataacttttatgccagt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aatgtgaaatggcagaaatactaatgaaaggtgtgacattttaataacttttatgccagt 621
Query: 125 gtttgaggtcctattgtgtatcaggcattccttagggaatacacaggatgggaaaacatc 184
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 620 gtttgaggtcctattgtgtatcaggcattccttagggaatacacaggatggggaaacatc 561
Query: 185 tctgctcctgcataagaggcaaacagtaaatgaatgtgagcaaaaatatgtccaaaggga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tctgctcctgcataagaggcaaacagtaaatgaatgtgagcaaaaatatgtccaaaggga 501
Query: 245 tggatgcaacagggcagtgatacagaggacagaccaaggaccagaaggggactggaagaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tggatgcaacagggcagtgatacagaggacagaccaaggaccagaaggggactggaagaa 441
Query: 305 ggttaattaaggcagccaggtagatagtactgagaaagtgaccttcaagcaaaggcaccc 364
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 440 ggttaattaaggcagccaggtagatagtactgagaaagtgaccttaaagcaaaggcaccc 381
Query: 365 ccccacccacccaaataaaaccaagacaagcaaatctagggaacatccttcccaaagaca 424
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cccc---cacccaaataaaaccaagacaagcaaatctagggaacatccttcccaaagaca 324
Query: 425 atgaaacaagtatcaatgccgagggacaagatgtgtctaggactctgtgaactcgaatca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atgaaacaagtatcaatgccgagggacaagatgtgtctaggactctgtgaactcgaatca 264
Query: 485 ggggtggattatcacagaaggggaagaatagcactgggaggagagctccgcataactga 543
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 263 ggggtggattatcacagaaggggaagaatagcactgggaggagagccccgcataactga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 940
Length adjustment: 10
Effective length of query: 533
Effective length of database: 930
Effective search space: 495690
Effective search space used: 495690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no344_g18.g1 MSMg01no344_g18.g1 CHROMAT_FILE:
MSMg01no344_g18.g1 PHD_FILE: MSMg01no344_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:36 2005
(491 letters)
>mm_chr1_61215761_61216651
Length = 891
Score = 876 bits (453), Expect = 0.0
Identities = 479/491 (97%), Gaps = 7/491 (1%)
Strand = Plus / Plus
Query: 1 agtggggctgtcagcatcctccgctgtcaagaaaaggagctgaaggcaagcatcaagagc 60
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 208 agtggggctgtcagcatcctccgctgtcaagaaaaggagctgaa----agca---agagc 260
Query: 61 atggggggcagatgagagctgctgggctgacacccaacccgacgatagctgtccacggcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggggggcagatgagagctgctgggctgacacccaacccgacgatagctgtccacggcg 320
Query: 121 tggtggtccatttcttagcaccccaatccaatttgcagtggctgctaatcaggctcttgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtggtccatttcttagcaccccaatccaatttgcagtggctgctaatcaggctcttgg 380
Query: 181 gaaggcggggtataaatatgccacttacatctgcaaatacaataatgaaaactgatattt 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 gaaggcggggtataaatatgccacttacatctgaaaatacaataatgaaaactgatattt 440
Query: 241 gtaattgtacctgtatggccttacagactcaaaacgaaatggatttccaacctaatatgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtaattgtacctgtatggccttacagactcaaaacgaaatggatttccaacctaatatgg 500
Query: 301 ttaagtgagttcttcaacatgtaaggcccattatggcagaagagtggcatcactcctcac 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaagtgagttcttcaacatgtgaggcccattatggcagaagagtggcatcactcctcac 560
Query: 361 accctgacatgatggggacatctctgtcactgcacatgagtaaattatttttgttcacgt 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accccgacatgatggggacatctctgtcactgcacatgagtaaattatttttgttcacgt 620
Query: 421 ctgaaattgcctttccttagttgtagccccatctttcatgctggaaaggtatatacccca 480
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 621 ctgaaattgcctttccttagttctagccccatctttcatgctggaaaggtgtatacccca 680
Query: 481 ttctttccatt 491
|||||||||||
Sbjct: 681 ttctttccatt 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
