BAC Information

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BAC

Clone NameMSMg01-344H02
Chromosome1 (Build37)
Map Location 162,221,617 - 162,421,384
singlet/doubletdoublet
Overlap geneRabgap1l
Upstream geneRfwd2, EG620484, Tnr, 4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp
Downstream geneGpr52, EG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344H02.T7 (MSMg01no344_h02.b1)MSMg01-344H02.TJ (MSMg01no344_h02.g1)
ACCAG457507AG457508
length753732
length of high quality
(start - end)		519 (78 - 596)537 (73 - 609)
definitionCHROMAT_FILE: MSMg01no344_h02.b1 PHD_FILE: MSMg01no344_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:37 2005CHROMAT_FILE: MSMg01no344_h02.g1 PHD_FILE: MSMg01no344_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,221,617 - 162,222,135)(162,421,057 - 162,421,384)
sequence
GGGAAGAGTTCGGTAGTTTGCGGGGGGTAGTACGACTCACTATTCACAGA
GGATCCGCGGAATTCACTATATTGCGAATCTCAGGAGAAAAAGGAACTTC
AGAGAGCTTAGCCAACTCAGTAAACTATATAGAGCTCTTTTCTAGCCTGT
GATCATATTCTCGTCTCTGTACGTTCTCATCACTGTGAAAGCTGTTCACT
AAAACACCTACTACTCGTGTGTCATTCTTCAATGACAGGTTATACCTTGT
TTCTCAAGGTAATACGATATTGCTCAAATCTTTGAAGAGTTCAAGTCAAT
GACAATTTGAATTACACATTTATAGGTGACATTAATACTTTAAGTGGGAG
ATGTATTTAAAAGAAGGAAGCTAAGCAGCTCACATTCAAGAGCGAAGGCA
ATTTGCACTTTTCAGGTAGTAGCAATAAAAATGATCCTTTCACATGAAGG
GACTGAATTAATGTAATTGTGACTACTGGGCTAGAGTACTCTACAGAGAG
TCTGAGGTCACACTTTGATTATTTGGAAGAGCTACACTGAGTCTTCAGAT
TTATTACATATTATATAGTTCTCACACTGCCTTGGATATATGGAATTTCA
GATCATTAAATTGCCACCATCTATTATACTGAAGAATTACCGTAACAGAT
AATTGAAAAAGTTCACCGAAAACTTCTGCTCTTCCCACAACCCTTCCCTC
ATTTAAATTTCCTAAAATAAAAATTGAAAAGAATGCCCCGGTACATCGCC
TCA

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCACATGCAAAGAAAAGTTCATAGTCAAA
TGATAGAGGGAAGGTTATGCTGCTCCCGGGTTAAGGTCTAGACCGCCAGT
GTACAGGCAGCCACCTTAGCCACAGTTCTATGACATGCTTACACTGTGAT
AGGTCAGATGGAGTACAAGTGTAAAAACACTTTGTATCACATTTTATAAA
CTACTGTGAAATGGGAATACAAAATATTTTAAGAGTTTTAAGATTGATTA
CAGGGTGAGGTGATATTTCAGGTAACATTGATTATACAAAATGTCATTAA
ATTAAATTAAATTAATTTCTGTTGAGTGTGATAGCATAGGGATGCCTAGG
CAGTCAAATACAAACTTAACAGCAGCCTGGCCTGCAGAGCAAATTCCAGG
CCATTGCAAACTAAATAGAGAGACTTTATCTTTTATATACTTATTATGAT
AATGTATTAGTTACATTTCATTAGATATTTTTATTTTTGATATTGTGTCA
TTTCCTTTCTCCCTTCCCTTTCTTCCCTCCAAACCTTCTCATGCTTTCCT
CATTGCTTTTTCAAATGAGGCTTTGTCTTTCCAATGAGAAATAATTTTTC
ATGTTCTTTTTTTACATTTTGTTTTGGCTTTCAGAAAACTTTAAATTGCC
TTTCATTTTATTCTCTTCAAAAACTAAATTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_h02.b1 MSMg01no344_h02.b1 CHROMAT_FILE:
MSMg01no344_h02.b1 PHD_FILE: MSMg01no344_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:37 2005
         (519 letters)



>mm_chr1_162221417_162222335
          Length = 919

 Score =  973 bits (503), Expect = 0.0
 Identities = 515/519 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctcaggagaaaaaggaacttcagagagcttagccaactcagtaaactatatagagctc 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 atctcaggagaaaaaggaacttcagagagcttagtcaactcagtaaactatatagagctc 260

                                                                       
Query: 61  ttttctagcctgtgatcatattctcgtctctgtacgttctcatcactgtgaaagctgttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttctagcctgtgatcatattctcgtctctgtacgttctcatcactgtgaaagctgttc 320

                                                                       
Query: 121 actaaaacacctactactcgtgtgtcattcttcaatgacaggttataccttgtttctcaa 180
           ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 actaaaacacctagtactcgtgtgtcgttcttcaatgacaggttataccttgtttctcaa 380

                                                                       
Query: 181 ggtaatacgatattgctcaaatctttgaagagttcaagtcaatgacaatttgaattacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtaatacgatattgctcaaatctttgaagagttcaagtcaatgacaatttgaattacac 440

                                                                       
Query: 241 atttataggtgacattaatactttaagtgggagatgtatttaaaagaaggaagctaagca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttataggtgacattaatactttaagtgggagatgtatttaaaagaaggaagctaagca 500

                                                                       
Query: 301 gctcacattcaagagcgaaggcaatttgcacttttcaggtagtagcaataaaaatgatcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctcacattcaagagcgaaggcaatttgcacttttcaggtagtagcaataaaaatgatcc 560

                                                                       
Query: 361 tttcacatgaagggactgaattaatgtaattgtgactactgggctagagtactctacaga 420
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 tttcacatgaagggactgaattaatgtaattgtgattactgggctagagtactctacaga 620

                                                                       
Query: 421 gagtctgaggtcacactttgattatttggaagagctacactgagtcttcagatttattac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagtctgaggtcacactttgattatttggaagagctacactgagtcttcagatttattac 680

                                                  
Query: 481 atattatatagttctcacactgccttggatatatggaat 519
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atattatatagttctcacactgccttggatatatggaat 719


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no344_h02.g1 MSMg01no344_h02.g1 CHROMAT_FILE:
MSMg01no344_h02.g1 PHD_FILE: MSMg01no344_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:38 2005
         (537 letters)



>mm_chr1_162420448_162421384
          Length = 937

 Score =  627 bits (324), Expect = 0.0
 Identities = 327/328 (99%)
 Strand = Plus / Minus

                                                                       
Query: 210 agagttttaagattgattacagggtgaggtgatatttcaggtaacattgattatacaaaa 269
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 937 agagttttaagattgattacagggtgaggtgatatttcaggtaacattgattatataaaa 878

                                                                       
Query: 270 tgtcattaaattaaattaaattaatttctgttgagtgtgatagcatagggatgcctaggc 329
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 tgtcattaaattaaattaaattaatttctgttgagtgtgatagcatagggatgcctaggc 818

                                                                       
Query: 330 agtcaaatacaaacttaacagcagcctggcctgcagagcaaattccaggccattgcaaac 389
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 agtcaaatacaaacttaacagcagcctggcctgcagagcaaattccaggccattgcaaac 758

                                                                       
Query: 390 taaatagagagactttatcttttatatacttattatgataatgtattagttacatttcat 449
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 taaatagagagactttatcttttatatacttattatgataatgtattagttacatttcat 698

                                                                       
Query: 450 tagatatttttatttttgatattgtgtcatttcctttctcccttccctttcttccctcca 509
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 tagatatttttatttttgatattgtgtcatttcctttctcccttccctttcttccctcca 638

                                       
Query: 510 aaccttctcatgctttcctcattgcttt 537
           ||||||||||||||||||||||||||||
Sbjct: 637 aaccttctcatgctttcctcattgcttt 610


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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