BAC Information

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BAC

Clone NameMSMg01-344H04
Chromosome1 (Build37)
Map Location 123,662,317 - 123,662,721
singlet/doubletsinglet
Overlap genenone
Upstream geneAI848258, Insig2, Ccdc93, LOC100041926, Htr5b, LOC666656, Ddx18
Downstream geneLOC666971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344H04.T7 (MSMg01no344_h04.b1)MSMg01-344H04.TJ (MSMg01no344_h04.g1)
ACCAG457511AG457512
length771749
length of high quality
(start - end)
496 (61 - 556)530 (73 - 602)
definitionCHROMAT_FILE: MSMg01no344_h04.b1 PHD_FILE: MSMg01no344_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:38 2005CHROMAT_FILE: MSMg01no344_h04.g1 PHD_FILE: MSMg01no344_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTAGCCGTCGGTACGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGGATTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCG
CCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAAGCATGCGCCACCATGCC
CGTCAGGATTCCACTCTTAATATCATGATTTTGAGGACTAGGTTTCAACA
GATGAATGAGGGGCAGGCAGTAAACATTCAGGACTGTCTTAGTTTTGTTT
ACTATTGCTGTGAAAAAAATACTTGGAAATAGCAAGTCAGGGAGAAAACT
TTTTTTTTTTTAGCTCTCAATTCCAGATTACTATACATGAAGCAGGAAAG
TGACAACAGTAGGAATCTGAACTGCTAGTCACATCACAGTCTAGAGCAGG
GAACAAAACGTGCTTAGCTCTTTCTCTCCTTTTAGGCAGTCCAGGGCCCA
AATCCAGGGAATGACACCACCCACAGTAGTCTGTGTCTTCTTGTCTCACC
CTAACCAACACCTCTCCCCCTAACACACGCAGATGTGCCAACAGGTCACC
CTGAATTAAACAGTCCCTCAATGAAACTTTCTTCCTAGGTAATTTCAGAT
TGTGTCAAGGTGACAATCCAAAATTAACCCTTACTCGGCCCTAAAGAATT
TTTATTAATCCGGGAATTCTTTTTAAAATTTTAAAGGACAATTTCCCTTT
TCCAAACAAGTGTTAATCCTTTATTTGAAAGGCGGTTTATTCTAATGAAA
TTCTTTCTGGTGCGGCGCGTG
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTAAAAACGAAGTAGTAGAAATCTACTA
CAAATTAATAAGGAAAAGATAAATAACCCAAGGAAAAAATATAGACAAAA
GCGAGGAAAATGCATCACACAGAGGAGGAAACCCAGAGGACCAATAAACA
TGAAAGATTGTCAACTTTATGAATAGTCAGGAAGACAGACAAACCACCAG
TGAAATGTCATTTCATATCCACCCAGCTGGCAATGAACTTAAAGATAGAC
AAGATTCAATGCCAGTGGGGACACAGAAATACGGAAGCTGCACTCTCTGC
CAGTCTGCAGGGCATTCAAGCACAGCCTCTTGGAGAAACATTTGACAGCC
CTTGGTAGAAAAGAAATATCTACCTCTAGGTGTCTATCCTAAAATCCCTC
ATACGTGACCATAAGAGACTTCCATAGAAAGATATGTGGTGGCACTGTCA
GCAGTTATGAGAACTTTCTAACATCTATCCTATACAAGCTACAGTCATAA
AGGATGGCATATACCTGCAGTGGAAGATACCAGAGCAGTACAAATGAATG
AAGAAATGTGCCAGGCACCAGAGTGAATAGAAACAGATACAAAAAAGGTA
TGATTGTGATTGTTAATACTGACTGTCAAATGGGCAGGATTTAGGATCAC
CAAAGGGGGCAATCTTAACCAGCTTTATTTGCCACCTAACACAGGTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_h04.g1 MSMg01no344_h04.g1 CHROMAT_FILE:
MSMg01no344_h04.g1 PHD_FILE: MSMg01no344_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:38 2005
         (530 letters)



>mm_chr1_123661792_123662721
          Length = 930

 Score =  760 bits (393), Expect = 0.0
 Identities = 402/405 (99%)
 Strand = Plus / Minus

                                                                       
Query: 122 ataaacatgaaagattgtcaactttatgaatagtcaggaagacagacaaaccaccagtga 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 ataaacatgaaagattgtcaactttatgaatagtcaggaagacagacaaaccaccagtga 871

                                                                       
Query: 182 aatgtcatttcatatccacccagctggcaatgaacttaaagatagacaagattcaatgcc 241
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 aatgtcatttcacatccacccagctggcaatgaacttaaagatagacaagattcaatgcc 811

                                                                       
Query: 242 agtggggacacagaaatacggaagctgcactctctgccagtctgcagggcattcaagcac 301
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 agcggggacacagaaatacggaagctgcactctctgccagtctgcagggcattcaagcac 751

                                                                       
Query: 302 agcctcttggagaaacatttgacagcccttggtagaaaagaaatatctacctctaggtgt 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 agcctcttggagaaacatttgacagcccttggtagaaaagaaatatctacctctaggtgt 691

                                                                       
Query: 362 ctatcctaaaatccctcatacgtgaccataagagacttccatagaaagatatgtggtggc 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ctatcctaaaatccctcatacgtgaccataagagacttccatagaaagatatgtggtggc 631

                                                                       
Query: 422 actgtcagcagttatgagaactttctaacatctatcctatacaagctacagtcataaagg 481
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 630 actgtcagcagttatgagaactttctaacatctatcctatacaagctacagtcataaacg 571

                                                        
Query: 482 atggcatatacctgcagtggaagataccagagcagtacaaatgaa 526
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 atggcatatacctgcagtggaagataccagagcagtacaaatgaa 526


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)