XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AAAACTTACCCAAAAAATGGCCTATTTGACCTGACATAGATGAAGAACCT
ATTAATGGCACAGAATTTTTAGCAAACACAATGTTGAACGATAGTACTTG
ACGTGCCAGATGACAAGGAAGGTTACACTACTCAGAGAAAATTGTTGCAT
CTTGTATTTCATATGCTTTCTTTGTAAACAGTAATTTTCATTAACAATAA
CACTAAAGGGTTGTGCATTTTAAAACACTATAAAATATGTTTGATGTTAG
GTTATTTATTTTGTCTTGTCCATATTCTTTTTAGCTTAATTTTCTATTGA
AATCACAAAATATATTTTTAATTGTACATATAATGAGGTATTAATTATTC
TTTAGTATTTTTGTTACTGATAATTTTGGGCAGTTTGTGGACTTGTGAAC
AGAATGAATCTGAATACTGTTACAGATTTTCTCCATTATCAGCAATCCTT
AGTCTAAGCAAGGTTAACCGTCTCAAGTTTCCGTCCTCCAAATTTTAATT
TTGTGACCACTCCTTAATGGATTGTGGGGGGCATGATCCCCCTTGATGTA
AAAGCCCCTTGTGTAACACTAATTTTCCTTTTTAAAACCCCCTTTTTTTT
TTTGTAAACTCCCCTTTTTTTTTCTTCAATAATAAAATCGTTGTTTATTT
TTTGTGTAGTACTTCGGTAATCCTTTCGATATAAATTCTTTCTCCCCCCC
CAG

NCCGATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGAGACAACCTGCCACCTTCCTG
GTGAGAGCACAGGGGTCTGCCCGGCCTGAGAGGTTTCTGCCTCAGGCCCC
GGCGGGAGCCTCCTTGGCTCCGGGACTCCTCGGAGGGCAGGCTGCATGGG
TGAGGGTGTGGAATACAGAGGCCAGCCGTTTCTGGAACAGGCGAGAGCCA
GAGAGCTTCTGAGGCGGCACCATTTTCAGCTCCAGACAACCCGTCACCTT
CCTGGCCAAAGCAACACAGCTTCTGGGAAAGATCCTGTTTTGGGCCTTCA
TCTTCAGCCATGAGGAGGTCCAAACACCAGATAACTGTGCACCTTCCCTG
AAAGAGGAGAGCTTGCCTGCAGAGACTGCTCTGACCACTGAAACTCAGAG
GAGAGAGCTAGTCTCCCACGTCTGCTGATAGAGGGTAACAAAATCAACAC
AGGAACAATCTCTAAACCAAGACAACTATAACAACTAACTCCAGAGATTG
TGAGATGGCGAAAGGAAACGTAAGATTACTACTACCAGAAACCGGGACCC
CTCCCATTCTCTGAACCCGAAAGCCCCTTTGGCCCGTCATGGACCCTAAA
TTCCTGAAAAGGAGAACCGGGATTTTATAGTATCTCCTGCTGAGGGTGAG
GGAATAAATAAAGGATTTTTATCTCCCTTTTGAAAAACGGGAG

Query= MSMg01no344_h05.b1 MSMg01no344_h05.b1 CHROMAT_FILE:
MSMg01no344_h05.b1 PHD_FILE: MSMg01no344_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:38 2005
         (422 letters)



>mm_chr1_147769781_147770606
          Length = 826

 Score =  758 bits (392), Expect = 0.0
 Identities = 414/426 (97%), Gaps = 10/426 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaaaactt----acccaaaaaatggcctatttgacctgacatagatgaagaacc 59
           ||||||||||||||    |   ||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ggaattcaaaacttgaaaa---aaaaaatggcctatttgacctgacatagatgaagaacc 570

                                                                       
Query: 60  tattaatggcacagaatttttagcaaacacaatgttgaac---gatagtacttgacgtgc 116
           ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||
Sbjct: 569 tattaatggcacagaatttttagcaaacacaatgttgaacaatgatagtacttgacgtgc 510

                                                                       
Query: 117 cagatgacaaggaaggttacactactcagagaaaattgttgcatcttgtatttcatatgc 176
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 509 cagatgacaaggaaggttacactactcagagaaaattgttgcatcttatatttcatatgc 450

                                                                       
Query: 177 tttctttgtaaacagtaattttcattaacaataacactaaagggttgtgcattttaaaac 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tttctttgtaaacagtaattttcattaacaataacactaaagggttgtgcattttaaaac 390

                                                                       
Query: 237 actataaaatatgtttgatgttaggttatttattttgtcttgtccatattctttttagct 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 actataaaatatgtttgatgttaggttatttattttgtcttgtccatattctttttagct 330

                                                                       
Query: 297 taattttctattgaaatcacaaaatatatttttaattgtacatataatgaggtattaatt 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 taattttctattgaaatcacaaaatatatttttaattgtacatataatgaggtattaatt 270

                                                                       
Query: 357 attctttagtatttttgttactgataattttgggcagtttgtggacttgtgaacagaatg 416
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 269 attctttagtatttttgttactgataattttgggcagtttgtggatttgtgaacagaatg 210

                 
Query: 417 aatctg 422
           ||||||
Sbjct: 209 aatctg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 826
Length adjustment: 9
Effective length of query: 413
Effective length of database: 817
Effective search space:   337421
Effective search space used:   337421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)