Query= MSMg01no344_j09.b1 MSMg01no344_j09.b1 CHROMAT_FILE:
MSMg01no344_j09.b1 PHD_FILE: MSMg01no344_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:49 2005
(434 letters)
>mm_chr1_82320762_82321597
Length = 836
Score = 832 bits (430), Expect = 0.0
Identities = 434/436 (99%), Gaps = 2/436 (0%)
Strand = Plus / Plus
Query: 1 cttttcagcaaccaaactgaaatgttgctttgtaggtgaaaaaaaa--taattaagtgct 58
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 cttttcagcaaccaaactgaaatgttgctttgtaggtgaaaaaaaaaataattaagtgct 260
Query: 59 tttaaagatgtatttgattaacaggaagctgatctgtgtaaattaattataacagtaatg 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttaaagatgtatttgattaacaggaagctgatctgtgtaaattaattataacagtaatg 320
Query: 119 atgtcatagccctgtcttttgttattaaccaggtaattggccaggagtttagaagcttat 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtcatagccctgtcttttgttattaaccaggtaattggccaggagtttagaagcttat 380
Query: 179 tgtaactgacagctagcagtttgaccttgtgtactgtctgaaagtgaaacatgctcaagg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtaactgacagctagcagtttgaccttgtgtactgtctgaaagtgaaacatgctcaagg 440
Query: 239 aatgtaaattgagtttgctcattgggcttcgggtgttgtcagagtgtctgatcttgggct 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgtaaattgagtttgctcattgggcttcgggtgttgtcagagtgtctgatcttgggct 500
Query: 299 cttagtttccttctttcattacttctttgttgaaactgctggcctggcatgtagtcccaa 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttagtttccttctttcattacttctttgttgaaactgctggcctggcatgtagtcccaa 560
Query: 359 actggatgttatacatctcccactaaaggcatctgaccaaacacaaatgtctgtgtcctt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actggatgttatacatctcccactaaaggcatctgaccaaacacaaatgtctgtgtcctt 620
Query: 419 gaagaattgtaatcag 434
||||||||||||||||
Sbjct: 621 gaagaattgtaatcag 636
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 836
Length adjustment: 9
Effective length of query: 425
Effective length of database: 827
Effective search space: 351475
Effective search space used: 351475
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no344_j09.g1 MSMg01no344_j09.g1 CHROMAT_FILE:
MSMg01no344_j09.g1 PHD_FILE: MSMg01no344_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:49 2005
(409 letters)
>mm_chr1_82484009_82484817
Length = 809
Score = 745 bits (385), Expect = 0.0
Identities = 403/409 (98%)
Strand = Plus / Minus
Query: 1 tctgttaacaatcagctgtcgccatgttggtctgccgagcctgtctcagcacattactct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tctgttaacaatcagctgtcgccatgttggtctgccgagcctgtctcagcacattactct 550
Query: 61 actcagatcgaataagttggaatatgggatatggctcctagtttttggaagtccgtatgc 120
|||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 549 actcagatcgaataagctggagtataggatatggctcctagtttttggaagtccgtatgc 490
Query: 121 agagaatcaggttgaaatatatttgttcttttagtgtaattctgaatgtcttaactgacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 agagaatcaggttgaaatatatttgttcttttagtgtaattctgaatgtcttaactgacg 430
Query: 181 gaggaccctgagacctttgggttgtatacagaaatttcactaagtacataaactgctcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gaggaccctgagacctttgggttgtatacagaaatttcactaagtacataaactgctcct 370
Query: 241 tgtcccatggatggataaggggtgataggaggagtttcttaatccctgatactgataatg 300
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 369 tgtcccagggatggataaggggtgataggaggagtgtcttaatccctgatactgataatg 310
Query: 301 atggatccattaatacagcttaatggaggtagatggagtttattaatgaggtgacattga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 atggatccattaatacagcttaatggaggtagatggagtttattaatgaggtgacattga 250
Query: 361 taggagatgagttgcatgtgtattgcgtctgtgtttatgttcctctcat 409
||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 249 taggagatgagttgcatgtgtattgtgtctgtgtttatgttcctctcat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space: 320000
Effective search space used: 320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
