BAC Information

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BAC

Clone NameMSMg01-344J14
Chromosome1 (Build37)
Map Location 77,728,182 - 77,877,640
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039137, Tfdp1-ps, Epha4, LOC100039330
Downstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344J14.T7 (MSMg01no344_j14.b1)MSMg01-344J14.TJ (MSMg01no344_j14.g1)
ACCAG457626AG457627
length790758
length of high quality
(start - end)		421 (51 - 471)469 (70 - 538)
definitionCHROMAT_FILE: MSMg01no344_j14.b1 PHD_FILE: MSMg01no344_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:50 2005CHROMAT_FILE: MSMg01no344_j14.g1 PHD_FILE: MSMg01no344_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,877,224 - 77,877,640)(77,728,182 - 77,728,650)
sequence
CCTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCTGTCCTGCATCTGGCTTTGTAGACCAGACTGGCTTTAA
ACTCACAGAGAACAGCCTGCGTCTACCTCCTGAGTACTGGGATTAAAATC
ATGCCCCTCCCCCTTACCGCCTGACATACAGTTTATTTTTTATTTTTAAA
ATTGTGGGCATGGAATGATAAATTAATCCATATAAAATCATTAACATATA
AAAATTAACACATGTAAAATCATTAAACCAGGACAATGGTAACCTTCTTA
TCTTGTTCTTTATGAAATGTATTAAAAACTTTGTCAGTTCCGATCACCCT
ATTATACCACAGAGTACCAGAAATTTCTTCCTATCTCACATGCCTGTGTT
TACTCCATTGTACCAGAAGGTGTCAACAAAATATTCTCACACAACAAAAT
GGGCTCCCAGGTCTTCCTCANATGAACCTAATAATAAATGAATATGGTTT
GTTTGATAAAACATTGAGCGCTGTGACTGTCCAGTTGGCTCTCTAGTACC
TTGAGGAATGGGTGGGTTACTGATGATTTCTTTTCTAATCCCACCTGAAT
GTAAATTACCCTGTTAAACTTACTTTGTTTTTTATAACTATTAACATTCC
CCATTTGTCCTTCCTCCCCTTTTATGATTTAATATTACCTTCTTCTTTTC
CGAGTTCTTTCATATATCCCTTTATTTTTTACCGTTATTTCTCCCTTAAT
ATTTTTTTTGTTTTTATTCACACTTTCTCCCTATTTTCAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTGGTTTATGCTACATGGTAAGATCGAAGC
CAGACAGAGCTACATAGAGTCACTGTTTCAAGAAAAATTTTTTTGCATTC
ATAGTACCCTTGGCTGTCAAGGACTAATTTGTTTAGAAATATCTGTCTCC
AGGTACGGAATGAAAGGATGTGTCATTTTATTTATTGGTTGCTCATGCTT
TTCTGGCTGAGATTTAACACCAAGTCAATCTGCACTAAAGTCTGCAGACC
AAGCATATGGAAGAAGGAAATTCATGAAAACAGCTACAGGCACGACCAGG
GGTATCACAGGCTACCTCCTCTCCGTCCGTTGGAGAGTATGTCATTGGAA
CCCTTCTCAAGGCTTTTCCAAAAGGAGCTCCAACCTTCTAGAATTCAATC
CACTTCTTTAGTTCTCTAATGAATTAAGGTTCAAAGCGTACCCTATGACC
ACTCGAGGCCTTTAACAAGATCTGTAATGGCTTATAAAATGGTTCTGTAA
CATGCCGGCCTCCTTCTAGGTTGTTGTGAAGAAAAGGCTTTGCCTTGCTT
AGTAATATGTTTTGATCCCTTGTTAATCTGGACACCCTCTCTTTCCTTTA
TTTTTTTTTATTCTCTTCCTTTATAAACTCCCAGGGTCCCGTCCCTCATT
TATCATTTTCTATTTTCTCCCTATTCTCTGTTCTTCTGTCTTTTATACCT
CCTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_j14.b1 MSMg01no344_j14.b1 CHROMAT_FILE:
MSMg01no344_j14.b1 PHD_FILE: MSMg01no344_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:50 2005
         (421 letters)



>mm_chr1_77876952_77877772
          Length = 821

 Score =  791 bits (409), Expect = 0.0
 Identities = 415/417 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctgtcctgcatctggctttgtagaccagactggctttaaactcacagagaac 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ggaattctctgtcctggatctggctttgtagaccagactggctttaaactcacagagaac 630

                                                                       
Query: 64  agcctgcgtctacctcctgagtactgggattaaaatcatgcccctcccccttaccgcctg 123
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 agtctgcgtctacctcctgagtactgggattaaaatcatgcccctcccccttaccgcctg 570

                                                                       
Query: 124 acatacagtttattttttatttttaaaattgtgggcatggaatgataaattaatccatat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 acatacagtttattttttatttttaaaattgtgggcatggaatgataaattaatccatat 510

                                                                       
Query: 184 aaaatcattaacatataaaaattaacacatgtaaaatcattaaaccaggacaatggtaac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aaaatcattaacatataaaaattaacacatgtaaaatcattaaaccaggacaatggtaac 450

                                                                       
Query: 244 cttcttatcttgttctttatgaaatgtattaaaaactttgtcagttccgatcaccctatt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cttcttatcttgttctttatgaaatgtattaaaaactttgtcagttccgatcaccctatt 390

                                                                       
Query: 304 ataccacagagtaccagaaatttcttcctatctcacatgcctgtgtttactccattgtac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ataccacagagtaccagaaatttcttcctatctcacatgcctgtgtttactccattgtac 330

                                                                    
Query: 364 cagaaggtgtcaacaaaatattctcacacaacaaaatgggctcccaggtcttcctca 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cagaaggtgtcaacaaaatattctcacacaacaaaatgggctcccaggtcttcctca 273


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no344_j14.g1 MSMg01no344_j14.g1 CHROMAT_FILE:
MSMg01no344_j14.g1 PHD_FILE: MSMg01no344_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:50 2005
         (469 letters)



>mm_chr1_77727982_77728850
          Length = 869

 Score =  853 bits (441), Expect = 0.0
 Identities = 462/469 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttggtttatgctacatggtaagatcgaagccagacagagctacatagagtcactgtttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tttggtttatgctacatggtaagatcgaagccagacagagctacatagagttactgtttc 260

                                                                       
Query: 61  aagaaaaatttttttgcattcatagtacccttggctgtcaaggactaatttgtttagaaa 120
           |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaaagatatttttgcattcatagtacccttggctgtcaaggactaatttgtttagaaa 320

                                                                       
Query: 121 tatctgtctccaggtacggaatgaaaggatgtgtcattttatttattggttgctcatgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatctgtctccaggtacggaatgaaaggatgtgtcattttatttattggttgctcatgct 380

                                                                       
Query: 181 tttctggctgagatttaacaccaagtcaatctgcactaaagtctgcagaccaagcatatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttctggctgagatttaacaccaagtcaatctgcactaaagtctgcagaccaagcatatg 440

                                                                       
Query: 241 gaagaaggaaattcatgaaaacagctacaggcacgaccaggggtatcacaggctacctcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 gaagaaggaaattcatgaaaacagctacaggcacgaccaggggtatcacaggctaccccc 500

                                                                       
Query: 301 tctccgtccgttggagagtatgtcattggaacccttctcaaggcttttccaaaaggagct 360
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctccgtccgttggagagtatgttattggaacccttctcaaggcttttccaaaaggagct 560

                                                                       
Query: 361 ccaaccttctagaattcaatccacttctttagttctctaatgaattaaggttcaaagcgt 420
           |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 561 ccaaccttctagaattcaatccgcttctttagttctctgatgaattaaggttcaaagcgt 620

                                                            
Query: 421 accctatgaccactcgaggcctttaacaagatctgtaatggcttataaa 469
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 accctatgaccactcgaggcctttaacaagatctgtaatggcttataaa 669


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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