BAC Information

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BAC

Clone NameMSMg01-344K07
Chromosome1 (Build37)
Map Location 178,653,837 - 178,814,196
singlet/doubletdoublet
Overlap geneCep170, Sdccag8, LOC666235
Upstream geneWdr64, Exo1, Gm104, Pld5, B020018G12Rik
Downstream geneAkt3, Zfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344K07.T7 (MSMg01no344_k07.b1)MSMg01-344K07.TJ (MSMg01no344_k07.g1)
ACCAG457660AG457661
length729719
length of high quality
(start - end)		509 (71 - 579)433 (72 - 504)
definitionCHROMAT_FILE: MSMg01no344_k07.b1 PHD_FILE: MSMg01no344_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:53 2005CHROMAT_FILE: MSMg01no344_k07.g1 PHD_FILE: MSMg01no344_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(178,653,837 - 178,654,324)(178,813,879 - 178,814,196)
sequence
NTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTCATCACCTGCTTCATGCCTTGAGGTTACCTAGAACTTTTT
GTTTGTCGAATGGATGAACATCTTGAGGGTACATTAAACAATATAAAAGC
AATTTATATTGTTTAATACATAAGCCAAGGGATGTATGCCTTTCTTTGGT
ACCAAGAGGCAATTTTAAATGAAAATATGCATCAGCTTTTGAAAAGGTTT
AACCATGTTTAAGAATGACGGGTCTTCTGGTGGTAAGTGACATTACCCTG
AATTTTCTAGGACAGCTAACATTTATCCCATACATTGTCAGAGAGACCAG
CACACTGTGTAGAACAGAGAGAGAAGAGAAACACAGGCAGTGGCCAGCCT
ACTCAGGAACTGTCAACAGTATTAGTCAAGGGCTAGATCAGAACCTCATT
ATTGTGAAACCTGCCAGAGAAAACAGAAACAAGAACACAATCCACGACTT
TGGATACATTTGGAGCACCTGTTATGGGCCAGCCCATAAATCATTCACAA
TCTATGTCCTGTTGAGGCTCACATTCCAGTCAAGAAAAGAAGCAAAGGCA
TAGCTGATCAAGGTGAAGCCTCCTGAGATAATCTGCATAACAATGCCAGG
ACTTGGGAGGTAAAGGGAAGCTTATCCCATAGAACATAATTGGATAATCT
CGGATTAATAAAGTATTCTTGCGTATAAC

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTAGTAATACAGCCCTCGGAGAAGGGCTGG
CAAACTCTTCCTAGAAAGGTTAGAAATCATGATAATATCTGGGTTTTGTG
GGCTCTGTGGTCTCTACCGCACCTTCTCAGCTCTGCTCTTTTTAAAGATC
TGTTTGTACTATTGTAACTAAGTGTCTGTAGGCGGGTGAGTGTGCATGTG
ATTGTAGGCTTCAGAAGAGGCCAGGGATGCTGGATACCCTGGAGCTGGAG
TTACAGGTCGTGCGTTCCCAGCGCTGCTGCTAGCAACTTAACAGCAGTCT
CCTGCAAGAGCAACACGTGCTCTTAACTGCTGAGCCCCACTCCGGAATGA
AGCAAATGGAACACTTAAGTATTGTTCATGTTTTTATAAAACTTCACTTG
TGAAATTAGGCAGAAGCAGAGCTTGAATGAGTCTCCATTGGCTAACTCTT
CTCTGCTACAAGGAATATTGGCATCAGGTGCAAGCGTGTCAGGCATGTGC
TTGATACCATGCTCTCAATGCAGTCCCACAGGACATCTTGAAAAGCCCTT
GTACTCATCTGATTGACATCCTGACCTGATAATAGTCTGGGCTACAGAGT
ATAGCAAGTTCTATATTACGCTGTACTACCTGCTGATACCTTAATTCTCT
AAACAGCGCTATTCTTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_k07.b1 MSMg01no344_k07.b1 CHROMAT_FILE:
MSMg01no344_k07.b1 PHD_FILE: MSMg01no344_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:53 2005
         (509 letters)



>mm_chr1_178653616_178654524
          Length = 909

 Score =  936 bits (484), Expect = 0.0
 Identities = 487/488 (99%)
 Strand = Plus / Plus

                                                                       
Query: 22  gaactttttgtttgtcgaatggatgaacatcttgagggtacattaaacaatataaaagca 81
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 gaactttttgtttgtcgaatggatgaacatcttgagggtacattaaacaatataaaagca 281

                                                                       
Query: 82  atttatattgtttaatacataagccaagggatgtatgcctttctttggtaccaagaggca 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 atttatattgtttaatacataagccaagggatgtatgcctttctttggtaccaagaggca 341

                                                                       
Query: 142 attttaaatgaaaatatgcatcagcttttgaaaaggtttaaccatgtttaagaatgacgg 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 attttaaatgaaaatatgcatcagcttttgaaaaggtttaaccatgtttaagaatgacgg 401

                                                                       
Query: 202 gtcttctggtggtaagtgacattaccctgaattttctaggacagctaacatttatcccat 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gtcttctggtggtaagtgacattaccctgaattttctaggacagctaacatttatcccat 461

                                                                       
Query: 262 acattgtcagagagaccagcacactgtgtagaacagagagagaagagaaacacaggcagt 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 acattgtcagagagaccagcacactgtgtagaacagagagagaagagaaacacaggcagt 521

                                                                       
Query: 322 ggccagcctactcaggaactgtcaacagtattagtcaagggctagatcagaacctcatta 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ggccagcctactcaggaactgtcaacagtattagtcaagggctagatcagaacctcatta 581

                                                                       
Query: 382 ttgtgaaacctgccagagaaaacagaaacaagaacacaatccacgactttggatacattt 441
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ttgtgaaacctgccggagaaaacagaaacaagaacacaatccacgactttggatacattt 641

                                                                       
Query: 442 ggagcacctgttatgggccagcccataaatcattcacaatctatgtcctgttgaggctca 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ggagcacctgttatgggccagcccataaatcattcacaatctatgtcctgttgaggctca 701

                   
Query: 502 cattccag 509
           ||||||||
Sbjct: 702 cattccag 709


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no344_k07.g1 MSMg01no344_k07.g1 CHROMAT_FILE:
MSMg01no344_k07.g1 PHD_FILE: MSMg01no344_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:53 2005
         (433 letters)



>mm_chr1_178813364_178814196
          Length = 833

 Score =  569 bits (294), Expect = e-166
 Identities = 312/318 (98%)
 Strand = Plus / Minus

                                                                       
Query: 112 ctgctctttttaaagatctgtttgtactattgtaactaagtgtctgtaggcgggtgagtg 171
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 ctgctctttttaaagatctgtttgtactattgtaactaagtgtctgtaggcgggtgagtg 774

                                                                       
Query: 172 tgcatgtgattgtaggcttcagaagaggccagggatgctggataccctggagctggagtt 231
           ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 773 tgcatgtgagtgtaggcttcagaagaggccagggatgttggataccctggagctggagtt 714

                                                                       
Query: 232 acaggtcgtgcgttcccagcgctgctgctagcaacttaacagcagtctcctgcaagagca 291
           |||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 713 acaggtcgtgcgctcccagcgctggtgctaggaacttaacagcagtctcctgcaagagca 654

                                                                       
Query: 292 acacgtgctcttaactgctgagccccactccggaatgaagcaaatggaacacttaagtat 351
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 653 acacgtgctcttaactgctgagccccactccggaacgaagcaaatggaacacttaagtat 594

                                                                       
Query: 352 tgttcatgtttttataaaacttcacttgtgaaattaggcagaagcagagcttgaatgagt 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tgttcatgtttttataaaacttcacttgtgaaattaggcagaagcagagcttgaatgagt 534

                             
Query: 412 ctccattggctaactctt 429
           ||||||||||||||||||
Sbjct: 533 ctccattggctaactctt 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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