GTTTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTGTTTAGCTCTGTACCCCATTTTTTAATGGGGTTATTTGAATTTCTGG
AGTCCAGCTTTTTGAGCTCTTTGTATATATTGGATATTGGTCCCCTATCA
GATTTAGGATTGGTAAAAATCCTTTCCCAATCTGTTGGTGGCCTTTTTGT
CTTATCGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTATGAGGT
CCCATTTGTCAATTCTTGATCTTACAGCACCAGCCATTGCTGTTCGGTTT
AGGAATTTTTCCCCTGTGCCCATATGTTTGAGGATTTTCCCCACTTTCTC
CTCTATTAATTTCAGTGTCTCTGGTTTTATGTGGAGGTCTTTGATCCACT
TATAGTTGATCTTTGTACACGGAAGCCAGAATGGATCAATTTGCATTCTT
CTCCATGATCACTGCCCGCTGTCGCAGCGCCATTTGTTCGATATGCTTTC
CTTTTCCCACTGGATGGGTTTAGTCTTCCTTGTCTATGATCTAGCGACCC
TTTTGTTTTGTTGTATCCTTTTTGGGGTCTTCCCTTTTCACTTCTTTGCC
GATTTTTGTTTTGTTCTTGGAACTTCTAATCCTTCGTCCTCATTTTTTTT
CTCTTTATTGCTTCTCTTATTATATCCCTTATCTGTATATATTTTGCCCT
TTATATCCTCTCTTCCTTTCCTCCTCTCAATTATTTTTGNCATTAAACGT
TTTTTGTAATCTTCCTTTCTCCCTTTGCCG

CGATGAAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGATTTTCCCTCTAAATTCAAAATT
ACTTCCAGTTTTTCGCTATAATATAATGATATACCCTATATAATGATGTT
ATGAGTAGGTTTCTCTTTGTATTTCAAACAAAAAGAAAAATTAAGTTGAA
AATTAGAACTCATAATTCTCTTTACTCTTGAAATTGTTTTAAGCTAATTT
TCCTCATAAGGCTATAACTTTATTGTGTTTTACAGCTCAAATCATGTATA
TTTCTATACTTCTGGAATTCAGCATAGTGGCTGGAATGAAATAATTACTC
AAGAAATTATCATTACTATATTTGATTGATACAGTATATGTACATATTTG
TATGCCTGAAATTATAATCCATCTTAAAGTAAATAATAGTCCAACCACTG
CCAGTAAGGTATGAAATTCCTCAGTTGCTTCCTTTGGCTAAACCAAGATG
AAATCAGTTTGCAAGCATCCTACCTAATGGTATGTTGGTAATCAACAAAT
GTAAAAGTAAAAATCTCACAGTTATTTATTATACTAGTTCAAATAAAAAC
TGTAATTCTATAAATGATCACCTTTATTCATAAACCTAAAGTAGAACTAA
AGAACCAAACCTGCTCTTCAGGGATTTCATTGTTCTTTAAATTCTTAAAA
TTTACTCAAAAATATCAATATATGTTTTTCAT

Query= MSMg01no344_l03.g1 MSMg01no344_l03.g1 CHROMAT_FILE:
MSMg01no344_l03.g1 PHD_FILE: MSMg01no344_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:57 2005
         (598 letters)



>mm_chr1_10508483_10509480
          Length = 998

 Score = 1133 bits (586), Expect = 0.0
 Identities = 595/598 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agattttccctctaaattcaaaattacttccagtttttcgctataatataatgatatacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 agattttccctctaaattcaaaattacttccagtttttcgctataatataatgatatacc 739

                                                                       
Query: 61  ctatataatgatgttatgagtaggtttctctttgtatttcaaacaaaaagaaaaattaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ctatataatgatgttatgagtaggtttctctttgtatttcaaacaaaaagaaaaattaag 679

                                                                       
Query: 121 ttgaaaattagaactcataattctctttactcttgaaattgttttaagctaattttcctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ttgaaaattagaactcataattctctttactcttgaaattgttttaagctaattttcctc 619

                                                                       
Query: 181 ataaggctataactttattgtgttttacagctcaaatcatgtatatttctatacttctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ataaggctataactttattgtgttttacagctcaaatcatgtatatttctatacttctgg 559

                                                                       
Query: 241 aattcagcatagtggctggaatgaaataattactcaagaaattatcattactatatttga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aattcagcatagtggctggaatgaaataattactcaagaaattatcattactatatttga 499

                                                                       
Query: 301 ttgatacagtatatgtacatatttgtatgcctgaaattataatccatcttaaagtaaata 360
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 498 ttgatacagtatatgtacatatttgtatgtctgaaattataatccatcttaaagtaaata 439

                                                                       
Query: 361 atagtccaaccactgccagtaaggtatgaaattcctcagttgcttcctttggctaaacca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 atagtccaaccactgccagtaaggtatgaaattcctcagttgcttcctttggctaaacca 379

                                                                       
Query: 421 agatgaaatcagtttgcaagcatcctacctaatggtatgttggtaatcaacaaatgtaaa 480
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 378 agatgaaatcagtttgcaagcatcctacctaatggtatattggtaatcaacaaatgtaaa 319

                                                                       
Query: 481 agtaaaaatctcacagttatttattatactagttcaaataaaaactgtaattctataaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 agtaaaaatctcacagttatttattatactagttcaaataaaaactgtaattctataaat 259

                                                                     
Query: 541 gatcacctttattcataaacctaaagtagaactaaagaaccaaacctgctcttcaggg 598
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gatcacctttattcacaaacctaaagtagaactaaagaaccaaacctgctcttcaggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)