BAC Information

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BAC

Clone NameMSMg01-344P20
Chromosome1 (Build37)
Map Location 54,007,762 - 54,008,104
singlet/doubletsinglet
Overlap geneHecw2
Upstream gene1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b
Downstream gene4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik, Ankrd44
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344P20.T7 (MSMg01no344_p20.b1)MSMg01-344P20.TJ (MSMg01no344_p20.g1)
ACCAG457920AG457921
length782765
length of high quality
(start - end)
418 (78 - 495)339 (67 - 405)
definitionCHROMAT_FILE: MSMg01no344_p20.b1 PHD_FILE: MSMg01no344_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:21 2005CHROMAT_FILE: MSMg01no344_p20.g1 PHD_FILE: MSMg01no344_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAATTGTGGTTCCTGATTGAATTTTTGTTATCCATTCATCA
GATGGTAGACATCTAGGCTATTTCATTTCCTAGATATTTTGAATAGAGCG
GCAGTGAACATGGCGGAGCATGTATCTCTGGGGAAGGCTATTGAGTGCTT
TGGGTTTTTTGCCAAGGACTGGTGTTGCTGGATAGATCTCTTGTTTGCTT
TTGCAGAACTCTCCACATTGATTTCCATAGGAGTAGATCTATTTTTGGCT
TTTGAGTATTCTCTACATTGATTTTTGTTATGGCTACACCAGCAATTCCA
CCATCTATGAATGAGTATTCTTTCCCCAAGTTCTTGCCAGCATTTGTTGT
TAGTCATTTTGTTGGTCTTACCCACCCCCTCTCAACCAGTGGGTTGGGAC
CTCTTTGGGGGTCAAATGATTCTTTCACAGGGGTCATCCTAGACCATCTN
GAAACACATATGATTCATAACAGTAGCAAAATCTCACAGTTATTTTTAGC
TGTGTACAGTTATAAAGTACGAATGAAAATAACTTTATACGTTGGGTTTC
CTCAATACCTGAAGAATTGTTATAAAGACGCCTCTTTAATGTTGGTTGGC
CGATCCCAGGATCCAATCCCTTTTTGTACCGTTTCTTACATGTAACTCCC
CAGCTGGTGGTATATATTTCTTCCCTCACTGTTCTCCGTTTCATTTCTCT
TCTAATTCGTTTCTCCTCCCCTTTCGTTTTTG
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCATCTGGTAAAAACCAAAGAGACAGTTTTAGCT
TAATTATCACCTGCCATCTCTTAGCTCAAAGATCAACATAAGTTCTAAAA
TAAGCAGAAAAAAAGATAAAGAAGGCAGACCGTCAGTGAGCACTGTTTCT
AATGACTACCTCCTAGCATATCATCATCCTGTGTTTCTACATTTGCATCT
ATTTGGAAAAAAATGGAGGTCTAATAGGGAAGACAGTGGCACCTTTAGGT
GTGGCCAGAATGTTGCCAAAATATAATATTGCAATGAACCAAGGGTTGAT
TTACTACAGCTTCAGCGATGGGCTGATTTGTAAGAAAGAAGCTGAGGTAA
ACTTGCATCCCCCCACATCTTTATCAAAAGTTGAAGAATTAAGCTGAGAG
AATTCAACAAAACCCATGGCGGGTGAACAAAAGACTCAAGGTCAGGAAGC
TGATCCAGGCAACAGCGTGGCTTTGTGGGAACAGTGCTAAGCATCACTAG
CCAATGCCTCACGTCTTCCAGGCCAACCGTTTGTATAAGTCTAAGGCAAC
AGAGCTAGAGCTAACATTAGAACTGTAATAGACAGCGAATTCAACTTTTG
TTACAGTAATAATTATATTATGTGTATAGAGGCCCCATTATTAATTAGCT
CCCGGTTACCACTCCTTCCTCACGGTTTTTCCATTTGGGTTAACCTGCCA
ATACTTTCCCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_p20.g1 MSMg01no344_p20.g1 CHROMAT_FILE:
MSMg01no344_p20.g1 PHD_FILE: MSMg01no344_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:21 2005
         (339 letters)



>mm_chr1_54007562_54008304
          Length = 743

 Score =  569 bits (294), Expect = e-166
 Identities = 330/344 (95%), Gaps = 6/344 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatctggtaaaaaccaaagagacagttttagcttaattatcacctgccatctcttagct 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tcatctggtaaaaaccaaagagacagttttagcttaattatcacctgccatcccttagct 260

                                                                       
Query: 61  caaagatcaacataagttctaaaataagcagaaaaaaagataaagaaggcagaccgtcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 caaagatcaacataagttctaaaataagcagaaaaaaagataaagaaggcagaccatcag 320

                                                                       
Query: 121 tgagcactgtttctaatgactacctcctagcatatcatcat----c-ctgtgtttctaca 175
           ||| ||||||||||||||||||||||||||||||||||| |    | |||||||||||||
Sbjct: 321 tgaacactgtttctaatgactacctcctagcatatcatcctaaaactctgtgtttctaca 380

                                                                       
Query: 176 tttgcatctatttggaaaaaaatggaggtctaatagggaagacagtggcacctttaggtg 235
           ||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||
Sbjct: 381 tttgcatctatttggaaaaaa-tggaggtctaatagggaagatggtggcacctttaggtg 439

                                                                       
Query: 236 tggccagaatgttgccaaaatataatattgcaatgaaccaagggttgatttactacagct 295
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tggccaggatgttgccaaaatataatattgcaatgaaccaagggttgatttactacagct 499

                                                       
Query: 296 tcagcgatgggctgatttgtaagaaagaagctgaggtaaacttg 339
           |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcagtgatgggctgatttgtaagaaagaagctgaggtaaacttg 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 743
Length adjustment: 9
Effective length of query: 330
Effective length of database: 734
Effective search space:   242220
Effective search space used:   242220
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)