BAC Information

Click to search

BAC

Clone NameMSMg01-345D10
Chromosome1 (Build37)
Map Location 31,727,947 - 31,728,285
singlet/doubletsinglet
Overlap genenone
Upstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262, LOC624275
Downstream geneLOC666056, LOC100041238, Khdrbs2, EG408191
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345D10.T7 (MSMg01no345_d10.b1)MSMg01-345D10.TJ (MSMg01no345_d10.g1)
ACCAG458090AG458091
length745779
length of high quality
(start - end)		466 (58 - 523)361 (87 - 447)
definitionCHROMAT_FILE: MSMg01no345_d10.b1 PHD_FILE: MSMg01no345_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:37 2005CHROMAT_FILE: MSMg01no345_d10.g1 PHD_FILE: MSMg01no345_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCNNNNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCACCGCAGGGACAGAAGCAGAAAACATGCAGAAA
AGTTCCTTCTTGCTTGCTCTCCATGGCTTACTCAGCTTGTTTACCTACTT
ATTTAACTCAGAACCACCTGCCATAGATGGTGCTAATCACAGTTAGCTAA
AAACATCCACATCAATCATTAGTTAGTAATATGTCATACATATGTGCCCA
CAGGCCAATATTACAGAGGCAATTCAACTGAATTGAAATGAATTGAATCC
TTCCAACATAACTCTTAAGTTTCTGTTAAGTTGAAAAAAATACTACCTAG
TACAATAGACCCCTTTGTCAACTAGACACACAGTATACCACTATTTTTAT
TTTCTTGTTTATATCCAAGACTGAATGATAATATCACAATATAAAATACA
TTTTATATAAATATAACTTTAAATTTTTCAGTCATTAAAAATTCAAACAA
CATAAAAAATCCAATTTCTCTTTCAAAATATAGTCTCATAACTGTGGGTT
CCTGTAAAATCATAAAAAAGTTAAATACTGCCTGACNTCCAGATCAAATT
ATATGAGTACAGTTCCCATAAATTTATACANNATTCATATCAAAATAGTA
AAACTCATTTCCTCTAGCTCCATGCATGAAATCTGAGCCCCTCCAATTTT
ATTATCCATAGGGCCTTTTTCCCCAGGAAGTTGCCTCCCAGGGGG

CCCTCCTTCACAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAAAAGAAAGAA
ATAGAACTGGAGATAGTGTTGCATGTATGTATGCACAACACATGCAACAC
ATGGGAGAGTGAGGAGCTCTGCAAATTCAAGCAGCCTGGGTCAAAGATGC
CTGTGTTGAGGTTATAGACTAATAGGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACNAAGACAG
AGAGACAGAGAGACAGAGAGACAGAGACAGAGAGACTTATTTATAGAGTG
ACAGAGAGACAGAGAGAGACAGAGAGACAGACACAGAGAGACAGACTCAG
AGACAGAAGAGGAGGACAAGGAGGTAATGGAGGAAGGGAGAGAGGTAGGA
AAAGAGGGGAGGATCTCTCTTCTTCCTTTCCCCTCTTCCTTTCTCTTCCC
CTCATTCCTCTCTCCTCTTCTCACCCACTTCCTCACTCTACTTTTTTTTC
CCGTTTCTTATTTTTCTCTTTTTCTCTTCACTTTCTTCTCATTGTCTTCC
GTTTTTTCCTTCTTTCCTTTCCTCCTGCCTCGCTCTACCCGTTTCTCCTG
TCACCCTCTTATTCCGTCATTATTCCTCTTTTTTATTTCTCTTTTTTTCC
TCTTTTTCAGTCTGCTCTATTCCCTCTTTCTTCTCTTACTTCCTCCTTTT
TTCCTCCCTTCATTCTTTTTATCTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_d10.g1 MSMg01no345_d10.g1 CHROMAT_FILE:
MSMg01no345_d10.g1 PHD_FILE: MSMg01no345_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:37 2005
         (361 letters)



>mm_chr1_31727947_31728707
          Length = 761

 Score =  495 bits (256), Expect = e-144
 Identities = 316/346 (91%), Gaps = 22/346 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacaaaagaaagaaatagaactggagatagtgttgcatgtatgtatgcacaacacatgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 cacaaaagaaagaaatagaactggagatagtgttgcatgtatgtatgcacaacacatgca 280

                                                                       
Query: 61  acacatgggagagtgaggagctctgcaaattcaagcagcctgggtcaaagatgcctgtgt 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 279 acacatgggagagtgaggagctctgcaaattcaagcagcctgggccaaagatgcctgtgt 220

                                                                       
Query: 121 tgaggttatagactaataggagagagagagagagagagagagagagagagagagagagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 219 tgaggttatagactaataggagagagagagagagagagagagagagagacagagacagag 160

                                                                       
Query: 181 agagagagagagagagagaga--gagacna-agacagagagacagagagacagagaga-- 235
           | ||||| ||||| |||||||  ||||| | |||||||||||||||||||||||||||  
Sbjct: 159 acagagacagagacagagagacagagac-agagacagagagacagagagacagagagata 101

                                                                       
Query: 236 ------cagaga--cagagaga--cttatttatagagtgacagagagacagagagagaca 285
                 ||||||  ||||||||  |      | |||| ||||||||||||||||||||||
Sbjct: 100 gagcgacagagagacagagagagac------agagagagacagagagacagagagagaca 47

                                                         
Query: 286 gagagacagacacagagagacagactcagagacagaagaggaggac 331
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46  gagagacagacacagagagacagactcagagacagaagaggaggac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 96
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space:   264704
Effective search space used:   264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |