Query= MSMg01no345_f06.b1 MSMg01no345_f06.b1 CHROMAT_FILE:
MSMg01no345_f06.b1 PHD_FILE: MSMg01no345_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:45 2005
(530 letters)
>mm_chr1_138497557_138498486
Length = 930
Score = 971 bits (502), Expect = 0.0
Identities = 523/536 (97%), Gaps = 11/536 (2%)
Strand = Plus / Minus
Query: 5 gaattcagctgcccatgggtagtgctactgctcttttgtttgtttgtttgtttttgttgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 gaattcagctgcccatgggtagtgctactgctcttttgtttgtttgtttgtttttgttgt 869
Query: 65 tgttttttgtttttcgagacagggtttct----------ctggctgtcctggaactcgct 114
||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 868 tgttttttgtttttcgagacagggtttctctgtgtagccctggctgtcctggaactcgct 809
Query: 115 ctttagaccaggctggcctcgaactcagaaacctgcctgcctctgcctgggattaaaggc 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 ctttagaccaggctggcctcgaactcagaaacctgcctgcctctgcctgggattaaaggc 749
Query: 175 gtgcgccaccactgccgggtgctactgctcttgaatgagcttctccctgttataagggag 234
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 gtgcgccaccactgcc-ggtgctactgctcttgaatgagcttctccctgttataagggag 690
Query: 235 ctgaatccaatctcctctccactacctatgcaaagagccaagcagtcacccaagagattg 294
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 689 ctgaatccaatctcctctccaccacctatgcaaagagccaagcagtcacccaagagattg 630
Query: 295 cttcttgggctctatccagaaggccagggaaattccctcaagggtatttaaaatgtattt 354
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 629 cttcttgggctctatccagaaggccaggggaattccctcaagggtatttaaaatgtattt 570
Query: 355 acaaaatgatagagtgagctgatgaagcagttagaaaaacacacgtggctattggaagac 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 acaaaatgatagagtgagctgatgaagcagttagaaaaacacacgtggctattggaagac 510
Query: 415 agccggaactcttggagccagaaattgcattttaatcaaaggctcctgtccagtcgtttg 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 agccggaactcttggagccagaaattgcattttaatcaaaggctcctgtccagtcgtttg 450
Query: 475 catattaaatttgaccaatttttgccttgatatgataccattcgggaggggggaca 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 catattaaatttgaccaatttttgccttgatatgataccattcgggaggggggaca 394
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_f06.g1 MSMg01no345_f06.g1 CHROMAT_FILE:
MSMg01no345_f06.g1 PHD_FILE: MSMg01no345_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:45 2005
(497 letters)
>mm_chr1_138326093_138326989
Length = 897
Score = 899 bits (465), Expect = 0.0
Identities = 489/497 (98%)
Strand = Plus / Plus
Query: 1 ttcctgagcagcagcaggaagtggagttgggtagccagggtggggtcaaattatagaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcctgagcagcagcaggaagtggagttgggtagccagggtggggtcaaattatagaggc 260
Query: 61 cctgaagggaggcaggagcttgtggatctgatgtgggagacagtgaggccttctaaatta 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgacgggaggcaggagcttgtggatctgatgtgggagacagtgaggccttctaaatta 320
Query: 121 ctcgttgggcatagcatggtaaaagtggtgttttagggaggcaatctccctgctctcggt 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 ctcgttgggcatagcatggtaaaagtggtgttttagggaggcgatctccctgctctcggt 380
Query: 181 acatgagatttaaagaggaaggacccagagaccaggcatccagcaaaccagccaaggagt 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 acatgagatttaaagaggaaggacccagagaccaggcatccagcgaaccagccaaggagt 440
Query: 241 gagggggtcaaaggcagggtggaggccccgggactgaagggttaaatctgagagtccctg 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagggggtcaagggcagggtggaggccccgggactgaagggttaaatctgagagtccctg 500
Query: 301 taaagtaatcatttatgaggcttctgatgacatatggcatatggggaaagaaggcagctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaagtaatcatttatgaggcttctgatgacatatggcatatggggaaagaaggcagctg 560
Query: 361 gagaggcgactccagaaattatagttgtgcctttaattttagaaagggtaaccgagtaaa 420
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 gagaggtgactccagaaattatagctgtgcctttaattttagaaagggtaaccgagtaaa 620
Query: 421 tgtgggtcctggtaatattgtctgagcttggccttgctgtgaacagcaaacgaaggggaa 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 621 tgtgggtcctggtaatattgtctgagcttggccttgctgtgaacagcagacgacggggaa 680
Query: 481 tgcttttctcctgcaca 497
|||||||||||||||||
Sbjct: 681 tgcttttctcctgcaca 697
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space: 431969
Effective search space used: 431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
