BAC Information

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BAC

Clone NameMSMg01-345F20
Chromosome1 (Build37)
Map Location 163,527,561 - 163,692,718
singlet/doubletdoublet
Overlap geneEG435650, LOC100039623, LOC269134
Upstream geneRabgap1l, EG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18
Downstream geneFasl, AI848100, EG665109, Pigc, Dnm3, LOC100039703, Dnm3os, 5630401D24Rik, Vamp4, LOC435651, Myoc, Bat2d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345F20.T7 (MSMg01no345_f20.b1)MSMg01-345F20.TJ (MSMg01no345_f20.g1)
ACCAG458205AG458206
length779767
length of high quality
(start - end)		466 (55 - 520)490 (85 - 574)
definitionCHROMAT_FILE: MSMg01no345_f20.b1 PHD_FILE: MSMg01no345_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:48 2005CHROMAT_FILE: MSMg01no345_f20.g1 PHD_FILE: MSMg01no345_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:48 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(163,527,561 - 163,528,022)(163,692,229 - 163,692,718)
sequence
NNNNNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCTTTTCAAGTTTGAATCATCCTCCCATGTTATCAG
TATGAGCTATCTCCAAGAAGAGAGAAGAGAGCTCTACAATCGGAGTGGAG
AACTTCAAGGTGGTCCTGATGACAACTTAATTGAAGGTGGAGGAACAAAA
TTTGTCTGCAAACCAGGAGCCAGAAATATTACCATCACATTCCATCCATT
GCTGAGACTTATTCAAGAGATTGAGTCTGCCAAACAGTGTCCTTTTCGAG
AGTTTCTCACCATGTATATCAAGAATATCTTCCTTAATCAGGTCTTGGCT
GAGATCAACAAGGAGACTAAAGGCATCACCAAAAACTCAGCCCTCTTGAA
GATCCTAGCTAATGCAGACACCATGAAGGTTCTGGGAGTGCCGAGGCCTC
TTCTACAGAGCACAATCATCGTGGAGAAGACAGTTATGACCTTATGAACC
TGATGCATGACTTGAGTGTGTATTCAGATCAGTTTCTCAACATGGTGTGT
GTGTGAAGCTCTNAGAATACAAGGGCATGCGCTCCCTAGCCAGCAGGGTC
ATTGTCTATTCCGAAGAAAAATTGTCATCAGTGCATCTTGGGCAAAGAAG
ATGGGATCAACCGACTCTTGAAATCCCTCGTAATGGGACTAAAATGGTTC
CACCCCAACAGCTAAGGCCTGCCGAGGGAGGAGAAAAAAAATTTTTATGG
GCCCCCTTTGGTAAGAAACCTAAAACCCC

TTTTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGAAAGAATTCCAG
TGAAAGGCCCTGAGCTGAAGTGCCTGTCTGTCTTTTGTGTCCTAGAATAA
GCAGACAGTGTGACTTCCATGGAGAGAAATAACCTGAAATGGACAAGTCT
GGACAGTGAAGAGCAGGACAGCCTGTTGTGCCTCAGAAAAACCAAAAAAT
AGATAGATAAATAAATGGAAATTCATATATTCCATTTTGAAACAAACAGT
GTGATGATTACTGTTGATCATGTACAATCAGTGTCCAGCATTTATTTCTG
CCTTAATCTATTCTAGGTCTGAGTTTAAATGCTCTATCAGGGTCTTGTGG
CTTAAGAGACAAATTTTCTTTTTCTATGTTCTGTATGTGTGAGAAACAAT
AATAAGGCTTCAGATTATTTTCTTTGGTGATATATTTAAACTAANAGGTA
TCTATGCATATATGAAACAAAAGGAGGCACAGAGAGAAGGAGACGACTTT
AGTGGTAAAAACAATGGCTGACATTGGGCCTTCCTTTCATTGGATTTAAA
ACGTCTCGGCAAGACCAGATTCAAATGAGCAAGGCCCTGGGTTAACAAAC
TTGGAGAACACCCATTTTTTTCCCAGAAGGGGGGAAATCCCGGTCTCCTG
GGGGGGAACCCGGGTTTTTTCCTGGTTCATTCCCCTTCAAGGGGGGTTTC
TCCCCATAATTTTAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_f20.b1 MSMg01no345_f20.b1 CHROMAT_FILE:
MSMg01no345_f20.b1 PHD_FILE: MSMg01no345_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:48 2005
         (466 letters)



>mm_chr1_163527357_163528222
          Length = 866

 Score =  878 bits (454), Expect = 0.0
 Identities = 460/462 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcttttcaagtttgaatcatcctcccatgttatcagtatgagctatctccaaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcttttcaagtttgaatcatcctcccatgttatcagtatgagctatctccaaga 264

                                                                       
Query: 65  agagagaagagagctctacaatcggagtggagaacttcaaggtggtcctgatgacaactt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agagagaagagagctctacaatcggagtggagaacttcaaggtggtcctgatgacaactt 324

                                                                       
Query: 125 aattgaaggtggaggaacaaaatttgtctgcaaaccaggagccagaaatattaccatcac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 325 aattgaaggtggaggaacaaaatttgtctgcaaaccaggagccagaaatattaccgtcac 384

                                                                       
Query: 185 attccatccattgctgagacttattcaagagattgagtctgccaaacagtgtccttttcg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attccatccattgctgagacttattcaagagattgagtctgccaaacagtgtccttttcg 444

                                                                       
Query: 245 agagtttctcaccatgtatatcaagaatatcttccttaatcaggtcttggctgagatcaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agagtttctcaccatgtatatcaagaatatcttccttaatcaggtcttggctgagatcaa 504

                                                                       
Query: 305 caaggagactaaaggcatcaccaaaaactcagccctcttgaagatcctagctaatgcaga 364
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caaggagactgaaggcatcaccaaaaactcagccctcttgaagatcctagctaatgcaga 564

                                                                       
Query: 365 caccatgaaggttctgggagtgccgaggcctcttctacagagcacaatcatcgtggagaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caccatgaaggttctgggagtgccgaggcctcttctacagagcacaatcatcgtggagaa 624

                                                     
Query: 425 gacagttatgaccttatgaacctgatgcatgacttgagtgtg 466
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gacagttatgaccttatgaacctgatgcatgacttgagtgtg 666


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no345_f20.g1 MSMg01no345_f20.g1 CHROMAT_FILE:
MSMg01no345_f20.g1 PHD_FILE: MSMg01no345_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:48 2005
         (490 letters)



>mm_chr1_163692029_163692918
          Length = 890

 Score =  911 bits (471), Expect = 0.0
 Identities = 485/490 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   taggaaagaattccagtgaaaggccctgagctgaagtgcctgtctgtcttttgtgtccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 taggaaagaattccagtgaaaggccctgagctgaagtgcctgtctgtcttttgtgtccta 631

                                                                       
Query: 61  gaataagcagacagtgtgacttccatggagagaaataacctgaaatggacaagtctggac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 630 gaataagcagacagtgtgacttccatggagagaaataacctgaaatggacacgtctggac 571

                                                                       
Query: 121 agtgaagagcaggacagcctgttgtgcctcagaaaaaccaaaaaatagatagataaataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 agtgaagagcaggacagcctgttgtgcctcagaaaaaccaaaaaatagatagataaataa 511

                                                                       
Query: 181 atggaaattcatatattccattttgaaacaaacagtgtgatgattactgttgatcatgta 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 atggaaattcatatattacattttgaaacaaacagtgtgatgattactgttgatcatgta 451

                                                                       
Query: 241 caatcagtgtccagcatttatttctgccttaatctattctaggtctgagtttaaatgctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 caatcagtgtccagcatttatttctgccttaatctattctaggtctgagtttaaatgctc 391

                                                                       
Query: 301 tatcagggtcttgtggcttaagagacaaattttctttttctatgttctgtatgtgtgaga 360
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tatcagagtcttgtggcttaagagacaaattttctttttctatgttctgtatgtgtgaga 331

                                                                       
Query: 361 aacaataataaggcttcagattattttctttggtgatatatttaaactaanaggtatcta 420
           |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 330 aacaataataaggcttcagattattttctttggtgaaatatttaaactaaaaggtatcta 271

                                                                       
Query: 421 tgcatatatgaaacaaaaggaggcacagagagaaggagacgactttagtggtaaaaacaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tgcatatatgaaacaaaaggaggcacagagagaaggagacgactttagtggtaaaaacaa 211

                     
Query: 481 tggctgacat 490
           ||||||||||
Sbjct: 210 tggctgacat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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