Query= MSMg01no345_n09.b1 MSMg01no345_n09.b1 CHROMAT_FILE:
MSMg01no345_n09.b1 PHD_FILE: MSMg01no345_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:23 2005
(482 letters)
>mm_chr1_129564188_129565073
Length = 886
Score = 837 bits (433), Expect = 0.0
Identities = 453/462 (98%), Gaps = 4/462 (0%)
Strand = Plus / Minus
Query: 4 ggaattcctgtggtggcctttctccaatgatactcacagcttatgaaacatgcatgtgct 63
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggaattcctgtggtggtttttctccaatgatactcacagcttatgaaacatgcatgtgct 403
Query: 64 atttattcttattaaccacagtgatctatctatacacaagcctaagcagagagctacagc 123
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 acttattcttattaaccacagtgatctatctatacacaagcctaagcagagagctacagc 343
Query: 124 tcaaccttggcagggattgcactttattttattttatttttggggggattgcacttttta 183
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 342 tcaaccttggcagggattgcactttattttattttattttttgggggattgcacttttta 283
Query: 184 ttttattttttggggggattacac----ttttttttttactccttaccccccaccccaat 239
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 282 ttttattttttggggggattacacttttttttttttttactccttaccccccaccccaat 223
Query: 240 ggtggagaaaatgtgaatgtattttttaaattgtattttataaattttgtgataaaaaga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggtggagaaaatgtgaatgtattttttaaattgtattttataaattttgtgataaaaaga 163
Query: 300 aaaatctgtgttctaagtgctaaacatcctacaaggtgcctcggggtagagggaaaaata 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 aaaatctgtgttctaagtgctaaacatcctacaaggtgcctcggggtagagggaaaaata 103
Query: 360 gaccatggtcgttaggcgacatggctgtgtgcgagttgtttaaaattctcttctgctgct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 gaccatggtcgttaggcgacatggctgtgtgcgagttgtttaaaattctcttctgctgct 43
Query: 420 ggaagttggggctggatcccaagggggcggngttagaatttg 461
|||||||||||||||||||||||||||||| |||||||||||
Sbjct: 42 ggaagttggggctggatcccaagggggcggggttagaatttg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 886
Length adjustment: 10
Effective length of query: 472
Effective length of database: 876
Effective search space: 413472
Effective search space used: 413472
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_n09.g1 MSMg01no345_n09.g1 CHROMAT_FILE:
MSMg01no345_n09.g1 PHD_FILE: MSMg01no345_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:23 2005
(191 letters)
>mm_chr1_129372853_129373443
Length = 591
Score = 327 bits (169), Expect = 3e-94
Identities = 186/193 (96%), Gaps = 4/193 (2%)
Strand = Plus / Plus
Query: 1 aatgaataagtgaaggagtggtcagcatgagaccgtgagggagcttgcattgctggtagc 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 aatgaataagtgaaggagtggtcagcatgagaccgcgagggagcttgcattgctggtagc 260
Query: 61 ctagactgtggtgaacgaaagtgaagatgtcccggtagcctcctgatgacccactggccc 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 ctagactgtggtgaacgaaagtgaagatgtcccggtaacctcctgatgacccactggccc 320
Query: 121 cactgtgcctgtggg--aggggaggccgatgcccagccctgccattcccattgagccctt 178
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ca--gtgcctgtgggtgaggggaggccgatgcccagccctgccattcccattgagccctt 378
Query: 179 gaatgtgctcagc 191
||| |||||||||
Sbjct: 379 gaaggtgctcagc 391
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space: 106689
Effective search space used: 106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
