BAC Information

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BAC

Clone NameMSMg01-345P23
Chromosome1 (Build37)
Map Location 10,063,668 - 10,064,103
singlet/doubletsinglet
Overlap geneCspp1
Upstream geneSntg1, LOC100039464, EG620853, LOC665138, Rrs1, Adhfe1, LOC620542, 3110035E14Rik, Mybl1, Vcpip1, LOC100039536, LOC665173, Sgk3, EG620986, LOC100039643, 6030422M02Rik, LOC100039596, 4930418G15Rik, Cops5
Downstream geneArfgef1, Cpa6, LOC433271
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345P23.T7 (MSMg01no345_p23.b1)MSMg01-345P23.TJ (MSMg01no345_p23.g1)
ACCAG458688AG458689
length767862
length of high quality
(start - end)		442 (56 - 497)---
definitionCHROMAT_FILE: MSMg01no345_p23.b1 PHD_FILE: MSMg01no345_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:34 2005CHROMAT_FILE: MSMg01no345_p23.g1 PHD_FILE: MSMg01no345_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTTTTTTNNNCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCG
AGGATCCGCGGAATTCTTAATCTGTTCCGCGACTTTATGTTAATGGTGTA
GTTTTTCAACCATACTTTTCATCTTCTTCAGAAGGAAAACATAATTTGTT
AACAGCCACATAAAGAAATGTGACCTGAAAAATTTTGTTTATCGTGGATG
CTAATAAATGTTCATATAAAATTTTATGCTGGTTTCTCTGGCATAAGAAA
TTATACTAAAAAACAAAAAACAAATCAGTGTTTGCCAAATGGAAAAAAAA
AAAGATAGTTGAAAACATTTTCACTGTTTTAAATGTCTGCTTTTTTTATG
GAAGAAAATAAATTCTAACTTTGTTTTTCTTCTTTATGATCTTATAAGTG
AAGGTTCTTCAGGCCTGTTCTGTATCAGATTGTTTTAAAATATTTTCTGT
TTTGCTTCTTCATTCTTTCATGGGGTTTACTGTGCCAATTTTTAATTTAA
AAACCTTGGTTTTATGTATAATGAAATAATTCCCAGAAATTATGTGTCTT
AATGAAAAAACAATTTTGTTTTGAGTTCTGCCTGCCAACTTAAATGGTTA
CAGGGAATGTGTCCTGCCCCTGGCCCGAATAAAAATTTGGCGGCTTAAAG
AGCCCGGGATTTACCAATTAACCCCCTTGGTAAAAAACTGGGAGGGGTGT
ATCTTTTATCTATAACTTTGGAAAAAGGTCCAAAAAAAAAAAAACTCCCC
CTATTTTTTCATAGAGG

AAAAGACGATGATAGGGGAGCCTGGGGGCGCCTGGNCTTTCAATATAGTG
ACCTATANAAGATTTCCGNAATCAGCTGGGCTGGAGCAATGGCTCAGTGC
TTAAGAGCACTAACTTCCAAAGGTTCTGAGTTCATTNCCCAGCAAACACA
TGGTGTCTCACAACCATCTCTAATCGGCTGTTATGAATAGGGCAGGTTAA
AAAATTGGATGCGCGGTTCCCCTTGGAATGGGGCAAATTTTAAAATCCTT
TTGAAACCTACCCCCGAAGGGGAAAACAAAAGTTTAAATTTTTCCCCCCT
CAAGAAAACCCCCACCGGGAATCCCGGGGTTTTTAACCGGGGGCCACATT
CTCTCCCCACAAGGGGGAAAGAGGTCCCTCTTTTTCCCAAATCCAAAAAA
AATTTTTTTTGGGGTTTTTTTTTTTGGGAACCCCCCCCTCTTTTTCTCAT
TTNNNNAANNNNNAANAAAAAAAAANNNANAAAAATAATTTTTTTTCCCC
CNNCCCCCANNTNCTAAAAAAAACCCACAAATTTTTTTTATTAAAATACT
AACTTATTTTTTTTTTTACAAAAAAAATAATTTTTTTCTTCCCCCCCCTT
TTCTTNNTCTCCTTTCTTCTCCCCCTCCTATAATCACACCATTATCTTNT
TCTTTCTTTTTTTTTTTCTTTTTTTTTATTTCCTCCCTCCCCTNCTTTCC
CCCCTCTTTTCCTTTTTTTCCCCCTTTTCTCTTCTCCTTTATTATTTTCC
TTCAATCTCTTTTCCCTCTCTCCTCCTCCTTCTTATTTCTTCCCCCTTAC
TTCCCTCTTNTTACTCTTCACTCCTTTATATATTTCATAAATATTGTTGT
GTGTGGGAGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_p23.b1 MSMg01no345_p23.b1 CHROMAT_FILE:
MSMg01no345_p23.b1 PHD_FILE: MSMg01no345_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:34 2005
         (442 letters)



>mm_chr1_10063463_10064303
          Length = 841

 Score =  799 bits (413), Expect = 0.0
 Identities = 431/437 (98%), Gaps = 1/437 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcttaatctgttccgcgactttatgttaatggtgtagtttttcaaccatacttttc 65
           |||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 206 gaattcttaatctgatcagcgactttatgttaatggtgtagtttctcaaccatacttttc 265

                                                                       
Query: 66  atcttcttcagaaggaaaacataatttgttaacagccacataaagaaatgtgacctgaaa 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 atcttcttcagaaggaaaacataatttgttaacagccacataaagaaatgtgacctgaaa 325

                                                                       
Query: 126 aattttgtttatcgtggatgctaataaatgttcatataaaattttatgctggtttctctg 185
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 atttttgtttatcgtggatgctaataaatgttcatataaaattttatgctggtttctctg 385

                                                                       
Query: 186 gcataagaaattatactaaaaaacaaaaaacaaatcagtgtttgccaaatggaaaaaaaa 245
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gcataacaaattatactaaaaaacaaaaaacaaatcagtgtttgccaaatggaaaaaaaa 445

                                                                       
Query: 246 aaagatagttgaaaacattttcactgttttaaatgtctgctttttttatggaagaaaata 305
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aa-gatagttgaaaacattttcactgttttaaatgtctgctttttttatggaagaaaata 504

                                                                       
Query: 306 aattctaactttgtttttcttctttatgatcttataagtgaaggttcttcaggcctgttc 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aattctaactttgtttttcttctttatgatcttataagtgaaggttcttcaggcctgttc 564

                                                                       
Query: 366 tgtatcagattgttttaaaatattttctgttttgcttcttcattctttcatggggtttac 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtatcagattgttttaaaatattttctgttttgcttcttcattctttcatggggtttac 624

                            
Query: 426 tgtgccaatttttaatt 442
           |||||||||||||||||
Sbjct: 625 tgtgccaatttttaatt 641


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 841
Length adjustment: 9
Effective length of query: 433
Effective length of database: 832
Effective search space:   360256
Effective search space used:   360256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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