XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
TGACTTGCGAAAGGGGAAATTAGACATGTTCAGGATATGAGAATTATCTC
TGACATCTGCATAAATAGTTGAACATCGCTATTGTGTTCCTGCTTAGTGT
AAAGGTGTCTTTCCTATTAGAGTTTAATTTCACCACTTTCTGCCCTTCAG
CTGTCTTCTCCACTGTACTTTCATTCTCTTCTCCTGTCCATGATATTTTT
CCTTATTCCTACTCCATGACTCTCCCCTTTTCTTCCTTCCCTCCTCTCCT
TGATTAATTTCCCTTTTACTGAGTGATGGTTTTACATATTGTGGCCTAAG
CTACTATATTTTACAGATTTCTCACTCAAATGCCACATCTAGAAAAGCAG
AGTCTCAGGAAAGCTTTGGGCATTTTGTACAGAACATTAACCAATGACTA
ATGAACTTTATAATGTCTAGAAATTTTATCTTAAACACTCAGGCCAATTT
GCTTTTATCTCTATGTTACATCCTTCCTTATGATGAAAATATTTTCCTCA
AAATTTTAATTAAAAATGATGGCACTAGTGTATTTCTTATCCCAAACTCA
GTGCAAAGGCACAGGCTTGATGTTGTATTTTTTCTGTGTTTGAGCTTTAC
AGGATTCCTGCATTAAAAAAGCCAGTGTCTGCCTCGTATTTTCATCCTCT
TTTAACTACCGCTATTGAACTTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTGTCTAGCTTTTTACTCCATTTTTAAATAG
GATTATTTGATTTTCCGTAGTCTAACTTCTTGAGTTCTTTGTATTTATTC
TATATTAGCCTGGTATTGGATGTAGGATTAATCTCTTGGTGGACATTTCT
TTTCCTATTGACATTGTCCTTCACCTCAGAGAAGTTTTGTAATTTTATGA
GGTCTCATTTATTGATTCTTAGAGCATTAGGCATTGGTGTTATGTTCAGG
AAAATTTCCTCTGTGCCCATGTGTTCAAGGTTTTTCCCCACTTTCTCCTC
TATTAGTTTCAGTGAATCTAGTTTTATGTGGAGGTCCTTGATCCACTTGT
ATTGAGCTTTGTACAAGGAGCTATGAATGGATCCGTTTATATTCTTCCAA
ATGCTGTCCTCCAATTGAACAAGCATCATTAGTTGAAAATGCTGTCTTGT
TTCCACTCAATGATTTTAGCAACTTTGTCAAAGACCATGTGACCATAGGT
GTGTGGGTTCATTTCTGGGTCCTCATTTCTATTCCTTTCATCTTCCTGCC
TATCTCTCTACTGATTCCATACGGTTTTTATCTCTATTGCTCTGAAATAA
AGCTTGAGGTCAGGGATGGCGCTTCCCCTTGAATTCCTTTATTGCCGACA
ATAGTTTTTTCTATCCCCTCCG

Query= MSMg01no346_c05.b1 MSMg01no346_c05.b1 CHROMAT_FILE:
MSMg01no346_c05.b1 PHD_FILE: MSMg01no346_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:45 2005
         (552 letters)



>mm_chr1_104737543_104738494
          Length = 952

 Score =  967 bits (500), Expect = 0.0
 Identities = 536/548 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctgacttgcgaaaggggaaattagacatgttcaggatatgagaattatctct 63
           ||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 204 ggaattctctgacctgggaaaggggaaattagacatgttcaggatatcagaattatctct 263

                                                                       
Query: 64  gacatctgcataaatagttgaacatcgctattgtgttcctgcttagtgtaaaggtgtctt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gacatctgcataaatagttgaacatcgctattgtgttcctgcttagtgtaaaggtgtctt 323

                                                                       
Query: 124 tcctattagagtttaatttcaccactttctgcccttcagctgtcttctccactgtacttt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcctattagagtttaatttcaccactttctgcccttcagctgtcttctccactgtacttt 383

                                                                       
Query: 184 cattctcttctcctgtccatgatatttttccttattcctactccatgactctcccctttt 243
           | |||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||
Sbjct: 384 cgttctcttctcctgtccatgatatttttccttattcctattccatggctctctcctttt 443

                                                                       
Query: 244 cttccttccctcctctccttgattaatttcccttttactgagtgatggttttacatattg 303
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 444 cttccttccctcctctccttgattaatttcccttttattgagtgatggttttacatattg 503

                                                                       
Query: 304 tggcctaagctactatattttacagatttctcactcaaatgccacatctagaaaagcaga 363
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tggcctaagctactatgttttacagatttctcactcaaatgccacatctagaaaagcaga 563

                                                                       
Query: 364 gtctcaggaaagctttgggcattttgtacagaacattaaccaatgactaatgaactttat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtctcaggaaagctttgggcattttgtacagaacattaaccaatgactaatgaactttat 623

                                                                       
Query: 424 aatgtctagaaattttatcttaaacactcaggccaatttgcttttatctctatgttacat 483
           || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 624 aaggtctagaaattttatcttaaacactcaggccaatttgcatttatctctatgttacat 683

                                                                       
Query: 484 ccttccttatgatgaaaatattttcctcaaaattttaattaaaaatgatggcactagtgt 543
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ccttccttatgctgaaaatattttcctcaaaattttaattaaaaatgatggcactagtgt 743

                   
Query: 544 atttctta 551
           ||||||||
Sbjct: 744 atttctta 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)