BAC Information

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BAC

Clone NameMSMg01-346C17
Chromosome1 (Build37)
Map Location 24,049,184 - 24,049,681
singlet/doubletsinglet
Overlap gene4921533L14Rik
Upstream gene4933415F23Rik, Rn4.5s-ps4, EG623356, Ogfrl1, LOC665782, B3gat2, Smap1, 1110058L19Rik
Downstream geneLOC665808, Col9a1, Col19a1, LOC100040475, LOC665829, Lmbrd1, 4930472D16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346C17.T7 (MSMg01no346_c17.b1)MSMg01-346C17.TJ (MSMg01no346_c17.g1)
ACCAG458819AG458820
length759755
length of high quality
(start - end)		504 (31 - 534)557 (63 - 619)
definitionCHROMAT_FILE: MSMg01no346_c17.b1 PHD_FILE: MSMg01no346_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:47 2005CHROMAT_FILE: MSMg01no346_c17.g1 PHD_FILE: MSMg01no346_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCGCTATACGACTCACTATTTCGAGAGGATCCGCGGAATTCTCCCCCTT
TCTTAAGTATCTGCAAGTTCTGTAGTGTTTTCCACAACTCATGAGTAATA
TTTTTATGCCCTTCTTCTGAATTGGCCTTAAAGAGAATGTCTCTTCTTAG
TATTTTTAATGGACTGTTTTGTCACGTTGTTACTTCTCTCTTTGCTGTGA
TTTGTTTTGTGTCTTGTTCTTGTTACTATATTTCAGTAAGTAGGATTATA
ATACTGGAAACATTTTATAGAGTTCTTCCTTAGAAGTTCTTTAATAAAGG
TTAGTCACTTCTAAAAGGCCTAATATGAGATTTCACAGTGGATAAAATAG
TGTAATTGCAGTAGTCACCTTACTAATGATCTTTAGCTTAGTGTAGTAAT
TTAAAATGAATAGCTCAGTAAATGCAGTATATTTCTTTCAGGCAATTTTT
CATTAACATTTTTCACCACCAAGACCTTGAGCAGTGATGAATTTTTGTAG
AAATGCAGCCAGCTTGGTGTGGTGTGGTGTGGTGTGTGTTGTGCCGTTTT
TCCCCCCCATTCCTTTTCCTTTTTTTTCCTATCTCTACATTCCCTCTTTT
TTCCAATCTCCTCTTACATCCCCCTTTTTTTTCTCCCCCAATTCTTTTTC
TTTTCCTAATCTTACTCCTTATTCCAATATCTTACCAACTCCTATATTTT
ATATATTAATTTATTTATTTTTCTTCCCTTTATTTCCCTTCTCTTCTTAT
TTCCTTTCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCACATAAAACCAGAGACAGTGAAACTTATAGAGGAGAA
AGTGGGGAAAAGCCCCGAACTTATGGGCACAGGGGAAAAATTTCTAAACA
GAACAGCAATGGCTTGTGCTGTAAGATCAAGAATCGATAAATGGGACCTC
ATAAAATTGCAAAGCTTCTTTCTGCAAGGCAAAAGACACCATCAATGAGA
CAAAAAGGACACCAACAGATTGGGAAAGGATCTTTACCAATCCTAAATAT
GATAGGGTACTAATATCCAATATATACAAAGAGCTCAAGAAGCTGGACTC
CAGAAAATCAAATAACCCCATTAAAAAATAGGGTACAGAGCTAAACAAAG
AATTCTCAACTGAGGAATACCAAAGGGCTGAGAAGCACCTGAAAAAATGT
TCAGCATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CTACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTTGTGTGGACGTGGAGAAAGGGGAACACTCCTCCATTGCTGGTGG
GATTGCAAGCTTGTACAACCACTCTGGAAGTCAGTCTGGAAGGTCCTCAG
AAAATTGGACATAATACTACTGGAAGATCCAGCAATACCTCTCCTGGGGA
TATATCCAGAAGATGTTCCACTTGGAAAAAAAGAACATGTTCCATTATGT
CACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_c17.b1 MSMg01no346_c17.b1 CHROMAT_FILE:
MSMg01no346_c17.b1 PHD_FILE: MSMg01no346_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:47 2005
         (504 letters)



>mm_chr1_24048998_24049901
          Length = 904

 Score =  955 bits (494), Expect = 0.0
 Identities = 497/498 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattctccccctttcttaagtatctgcaagttctgtagtgttttccacaactcatgagt 66
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gaattctcccccttttttaagtatctgcaagttctgtagtgttttccacaactcatgagt 625

                                                                       
Query: 67  aatatttttatgcccttcttctgaattggccttaaagagaatgtctcttcttagtatttt 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aatatttttatgcccttcttctgaattggccttaaagagaatgtctcttcttagtatttt 565

                                                                       
Query: 127 taatggactgttttgtcacgttgttacttctctctttgctgtgatttgttttgtgtcttg 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 taatggactgttttgtcacgttgttacttctctctttgctgtgatttgttttgtgtcttg 505

                                                                       
Query: 187 ttcttgttactatatttcagtaagtaggattataatactggaaacattttatagagttct 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttcttgttactatatttcagtaagtaggattataatactggaaacattttatagagttct 445

                                                                       
Query: 247 tccttagaagttctttaataaaggttagtcacttctaaaaggcctaatatgagatttcac 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tccttagaagttctttaataaaggttagtcacttctaaaaggcctaatatgagatttcac 385

                                                                       
Query: 307 agtggataaaatagtgtaattgcagtagtcaccttactaatgatctttagcttagtgtag 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agtggataaaatagtgtaattgcagtagtcaccttactaatgatctttagcttagtgtag 325

                                                                       
Query: 367 taatttaaaatgaatagctcagtaaatgcagtatatttctttcaggcaatttttcattaa 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taatttaaaatgaatagctcagtaaatgcagtatatttctttcaggcaatttttcattaa 265

                                                                       
Query: 427 catttttcaccaccaagaccttgagcagtgatgaatttttgtagaaatgcagccagcttg 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 catttttcaccaccaagaccttgagcagtgatgaatttttgtagaaatgcagccagcttg 205

                             
Query: 487 gtgtggtgtggtgtggtg 504
           ||||||||||||||||||
Sbjct: 204 gtgtggtgtggtgtggtg 187


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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