BAC Information

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BAC

Clone NameMSMg01-346G12
Chromosome1 (Build37)
Map Location 175,234,339 - 175,234,813
singlet/doubletsinglet
Overlap genenone
Upstream geneIgsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403
Downstream geneDarc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346G12.T7 (MSMg01no346_g12.b1)MSMg01-346G12.TJ (MSMg01no346_g12.g1)
ACCAG459001AG459002
length748747
length of high quality
(start - end)		460 (38 - 497)488 (68 - 555)
definitionCHROMAT_FILE: MSMg01no346_g12.b1 PHD_FILE: MSMg01no346_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:05 2005CHROMAT_FILE: MSMg01no346_g12.g1 PHD_FILE: MSMg01no346_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:05 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATC
GTATAGTGGTTATTGTAAGAAAGGTTAAAGCTAAGACTCCATTTCTATTT
TTTTTTAACATGAGACATAGTGTATATTTTAATTAGGTATTTTCTTCATT
TACATTTCCAATGCTATACCAAAAGTTCCCCATACCCTCCCTCCCACTAC
CCTACCCAACCACTCCCACTTCTTGGCCCTGGCATTTCCCTGTATTGAGG
CATATAAAGTTTGCAAGACCAAGGGGCCTCTCTTTCCACTGATGGCTGAC
TAGGCCATCTTCTGATACATATGCAGCTGGAGACACGAGCTCCGGGGGGT
ACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGACCCCTTTA
GCTCCTTGGATACTTTCTCTAGCTCCTCCATTGGGGACCCTGTGATCCAT
CCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCTGGCAT
AGCCTCACAATCAGTTATATCAGGGTCCTTTCAGCAAAATCTTGCTAGTG
AATGCAATGGTGTCAGTGTTTGGAGGCTGATTATGGGAAGGATTCCTGGT
TATTGGCGCCTCTAAAAGGTCCATCCTTTCTTCCCACTTCCAAATTTTGT
TTTGTAATTCTTTCCTGGGCGTGTTCGCCCTCTATTTTATTAAAGGGTGA
AGGGGGCCCACCTTGTGGCCTCTCCATCCTACTTATAATAACCCTCTG

GTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCACCTCCAAATGTACACTGGTCTCCATGCCTC
CAGTTGCTGTTACCATGTTCTTTTTTTTTAAAAATTAATCCTTTATTAGT
TTACATTTCAAGTGATATTCCCCTTCCTGGTTACCCCTCCACAAGCCTCC
CATCCCATCCCATCCCATCCCATCCTCCCTCTTCCCCATCCCCTTTGCCT
CTATGAGGGTGCTCTTCCACCCACCCTCCCATTTCTGAGGTTCAGAGTTC
TGGTTGCTGTATGTATGGTACAGATTTCTCAATGTCTCATTGGCTCCTTT
ATTTCCCAAATTCTCTCTATCTTTTCCTCATCCATTTATTTTCCACATCT
ACTGCACCTTCTCTGCAAACTCTTAATTCCTTTCTTCCTCAGCACAAAGC
AAAATTGTCTTTAGTCTTCATTCCAACACTGAGGTAAACACCCATTTTGA
TGAAACTAANACCCACTATGGTACTTCAAAAAGGGATCAGCAGTATCAGT
GACACAAAAGATTGTAGAGTCTTCAGATTATTTTGAAAAACTTTATCCAT
TCCACCCCTTTGATGACAGCTAATCTTTTTAATAATTTTCTTTTATGAGT
CCCCCTGTTTCCCTATTAAGAATTTCATATTCCCCCAAGCATATATGCCT
GTTATCCATCAGGACCTAACCAAAAAACATGGCTTTCTGTGGGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_g12.g1 MSMg01no346_g12.g1 CHROMAT_FILE:
MSMg01no346_g12.g1 PHD_FILE: MSMg01no346_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:05 2005
         (488 letters)



>mm_chr1_175233926_175234813
          Length = 888

 Score =  913 bits (472), Expect = 0.0
 Identities = 474/475 (99%)
 Strand = Plus / Minus

                                                                       
Query: 14  tacactggtctccatgcctccagttgctgttaccatgttctttttttttaaaaattaatc 73
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 tacactggtctccatgcctccagttgctgttaccatgttctttttttttaaaaattaatc 829

                                                                       
Query: 74  ctttattagtttacatttcaagtgatattccccttcctggttacccctccacaagcctcc 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 ctttattagtttacatttcaagtgatattccccttcctggttacccctccacaagcctcc 769

                                                                       
Query: 134 catcccatcccatcccatcccatcctccctcttccccatcccctttgcctctatgagggt 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 catcccatcccatcccatcccatcctccctcttccccatcccctttgcctctatgagggt 709

                                                                       
Query: 194 gctcttccacccaccctcccatttctgaggttcagagttctggttgctgtatgtatggta 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gctcttccacccaccctcccatttctgaggttcagagttctggttgctgtatgtatggta 649

                                                                       
Query: 254 cagatttctcaatgtctcattggctcctttatttcccaaattctctctatcttttcctca 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 cagatttctcaatgtctcattggctcctttatttcccaaattctctctatcttttcctca 589

                                                                       
Query: 314 tccatttattttccacatctactgcaccttctctgcaaactcttaattcctttcttcctc 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tccatttattttccacatctactgcaccttctctgcaaactcttaattcctttcttcctc 529

                                                                       
Query: 374 agcacaaagcaaaattgtctttagtcttcattccaacactgaggtaaacacccattttga 433
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 agcacaaagcaaaattgtctttagtcttcattccaacactgaggtaaacacccattttga 469

                                                                  
Query: 434 tgaaactaanacccactatggtacttcaaaaagggatcagcagtatcagtgacac 488
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tgaaactaaaacccactatggtacttcaaaaagggatcagcagtatcagtgacac 414


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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