XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTC
TCTAGTCGATGTGTGTGTGTGTGTATGTGTGTGTATGTATGTATGTATTT
CCGACTCATCTATACCCCCCCGCCTACTACATATCCTACCATAACATCCC
CACCTCATCCCACCACCCACCCTCTTACTTCCCATTATATACTTTCTATT
GTTCCCCTCCCTAATATCAAACCCCTTTCCTCCCCCTCCCCTCCTTCCAT
CCCATTCTTACCCCATTTCATAAATCCTCCCATCTTCCCTCTAGTCACTT
TATCTTAACCTCTCTACCCTCTTGTTTTTTATCCCTAATTACTACTCCCC
CACTCCTTCCCCATTTCACTCCTTTTTCCCCACCCCCTCTTCCCTACCCC
CTCCCCTCCTCTTTTTCTTTTCTTTTCCCCCCCTTCCCCTCTTCCCCCTT
CCATCCTTTCTCCTTTTAATCCTCCTCCTCTTCCCCCCTTCCTCCTCACT
CTATTTTTCTCTCCTCACCATCCCTCCCCCCCCCCTTCTTCCCTTCTCTC
CCGTCTCATTCCTATCCTTTAATACATCCCCCCCCTATTTTTTCTTTCTC
CCTTATTCCCTTTTTCCCTTATCCTATCTTCCTTCCCCACTTTTTCAACT
TTTCCCCCCCCTCCATCTTTTCTCTCCCCCCTTTTCTTTTTTCCTCTTTT
TATTCCTCCTATTCTTCTTTACCCCATTATCACCCCTTTCCCCCATCCCA
CCCCCCCTTTCCCCCTTTCTTTTTCCACATATTTTCCACTCCCCCCCTAT
TCCCTTTTTTTTCCACCCCCCATTTTTACACCTTTTTCCCCCCTTTTTCC
CCTTTTCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGTATTAGAATGCAAATGTATAATACCTTTAG
AGGTATTCCTGTTTCAGCCATGCATATATCAGAAGCTAATAGAACACTTG
ATCAAATCCTACGTGCTAGCTACCTAAAACACAGTATATATTGGCATGTT
TCCCGGTGGAATAAATAATGAGATCAACCCTAATGGAGAAAAAAATGAGC
CTTACTGTAAGGAAGGTAAATGCCTTGTCCATGATTTTCCTTCCAAAGAT
ATGGATGATGCAGTGACATTTCAAAGAGGACATTATAAGGATCATTTCTC
AGTTGCAATGATGAAACATACATGTGTTTTAATCTGTTCTAATGTCCAAA
GGACTTCATTGTTGATGGCAAAACTTTCTCTTTTCCTTCTTAAATGATGC
TCTTTGGTAATTATGTCAAATGAAATTTAACCATAACTAACATTGGTGTA
AGTCCTCCCTGCAATAGTATGAGTATCTGAAAAATTTTACACCTCCATTA
TTTTGGGTGTTCCGGCAAGTATTCATGTCAAAAGCATGTTTGTTAACCTA
ACCTCAAAGTAAAAAATTCCCAAATGAGCTTTAACCCTTTAAAAGTTGCC
CATTTCCTTTTGTAAATTATCTCCCGCTCTTTTAGTCCCCCGTTAATAGG
CTTATTTTTTGATGAATTCCCCCATAAATAATTGGCCTCTTCCC

Query= MSMg01no346_h06.g1 MSMg01no346_h06.g1 CHROMAT_FILE:
MSMg01no346_h06.g1 PHD_FILE: MSMg01no346_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:09 2005
         (444 letters)



>mm_chr1_3417542_3418386
          Length = 845

 Score =  791 bits (409), Expect = 0.0
 Identities = 436/445 (97%), Gaps = 1/445 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtattagaatgcaaatgtataatacctttagaggtattcctgtttcagccatgcatata 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 agtattagaatgaaaatgtataatacctttagaggtattcctgtttcagccatgcatata 586

                                                                       
Query: 61  tcagaagctaatagaacacttgatcaaatcctacgtgctagctacctaaaacacagtata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tcagaagctaatagaacacttgatcaaatcctacgtgctagctacctaaaacacagtata 526

                                                                       
Query: 121 tattggcatgtttcccggtggaataaataatgagatcaaccctaatggagaaaaaaatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tattggcatgtttcccggtggaataaataatgagatcaaccctaatggagaaaaaaatga 466

                                                                       
Query: 181 gccttactgtaaggaaggtaaatgccttgtccatgattttccttccaaagatatggatga 240
           ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 465 gccttactgtaaggaaggtaaatgccttgtctatgattttccttccaaagatctggatga 406

                                                                       
Query: 241 tgcagtgacatttcaaagaggacattataaggatcatttctcagttgcaatgatgaaaca 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tgcagtgacattttaaagaggacattataaggatcatttctcagttgcaatgatgaaaca 346

                                                                       
Query: 301 tacatgtgttttaatctgttctaatgtcc-aaaggacttcattgttgatggcaaaacttt 359
           ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 345 tacatgtgttttaatctgttctaatgtccaaaaggacttcattcttgatggcaaaacttt 286

                                                                       
Query: 360 ctcttttccttcttaaatgatgctctttggtaattatgtcaaatgaaatttaaccataac 419
           |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 285 ctcttttccttcttaaataatgctctttggtaattatgttaaatgaaatttaaccataac 226

                                    
Query: 420 taacattggtgtaagtcctccctgc 444
           |||||||| ||||||||||||||||
Sbjct: 225 taacattgttgtaagtcctccctgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 845
Length adjustment: 10
Effective length of query: 434
Effective length of database: 835
Effective search space:   362390
Effective search space used:   362390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)