BAC Information

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BAC

Clone NameMSMg01-346K08
Chromosome1 (Build37)
Map Location 7,907,872 - 7,908,121
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302, LOC665063, LOC665069, LOC100039408
Downstream geneSntg1, LOC100039474, LOC620444, EG665007
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346K08.T7 (MSMg01no346_k08.b1)MSMg01-346K08.TJ (MSMg01no346_k08.g1)
ACCAG459182AG459183
length805758
length of high quality
(start - end)
255 (40 - 294)421 (69 - 489)
definitionCHROMAT_FILE: MSMg01no346_k08.b1 PHD_FILE: MSMg01no346_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:24 2005CHROMAT_FILE: MSMg01no346_k08.g1 PHD_FILE: MSMg01no346_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TTAATTACCTATTTCTCTTCAATTTTATCCTTCTAAACTGTATTCATTTA
AAAGTCCATTGAAATGACAACAGTTTTTTTTTTAAGCCAAAAAACCTTTT
TTATTGGGGAATTGAGTCCACTGACATAAGAGATATAAAAGAATAGTGAT
TGTTGCTTCCTGTTATTTTGATGTAGTTTTTATGTTTGTGTGGCTATCTT
CTTTTGGGTTTGCTTAAATATTACTTTCTTGCATTTTATAGGGCGTAGTT
TCCCTCCTTGCGTTGTTATTTCACATCTATTATTCTTTTATTATATCTAT
TATTTCCAGGACTAGATTTGCGAAAAGATATTGTGCATATATGGTTTTGT
CATGCCAACCCCCCCCATTTTTGCCTTTTCTTCCTGCCACTCCCCCTCTT
TTCCACATATTTGCCTCTCCCCCCTCTTTTTGTTCCCTTTTTCTCCCTTT
TGATTACACTTTCCCTTTTTCCTCCTTTACACCTATTTCCCTCTTTTCCC
GCTTCCTCCTTTTCCACTTTCCCCTTTTCTTTCCCCTCCCCCCCCTCCCT
TTCCCTTTTACCCCTCCTCCCCCCATTTATTTCATTCTTCTCTCCTTTTC
TCCCTTTTTATAACTTTCCACTCCTCCTCATCACCTATTTTTTTATTTTA
TCTCCCCACACCCCTCCCCCCCTTTATTATATCAATTTATCCTTACTCCC
CTATATAATTTTATTTTCCTTCCCTCATCTCTTTACCTTTCTTCTTCCTT
CTCAA
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCA
CCTGAAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAA
ACAACACTTAGATTCCACCTCAAACCAGTCAGAATGACTAAGATCAAAAA
TTCAGGTGGCAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCC
TCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTC
TGGCGGTTCCTCAGAAAATTTGACAAAGTACTACCGGAGGATCCAGCAAT
ACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTATGAAGGACA
CATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGG
AAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTA
CATTTACACAATGGAGTACTACTCAGCTATTAACAAGAATGAATTTTATG
AAATTCCTATCCCTGTGGCTGGATCTGGAGGGCTTCTCCCCTGATTTGAG
GGCTTCTATTCCTGCCTTACCTTTCTTGTTTTACAACTTCGTTTGTGGTA
GTAAATCGTCCTTCCCCCCTTCCTACTTTTCTTATTTCCTCTTTATTCTC
CCCTTTCCTTTTTTTCCTTGTTTTTTCCCCCCCTTTTTTGATATTATGTT
TATTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_k08.b1 MSMg01no346_k08.b1 CHROMAT_FILE:
MSMg01no346_k08.b1 PHD_FILE: MSMg01no346_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:24 2005
         (255 letters)



>mm_chr1_7907669_7908322
          Length = 654

 Score =  439 bits (227), Expect = e-128
 Identities = 245/251 (97%), Gaps = 1/251 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcattaattacctatttctcttcaattttatccttctaaactgtattcatttaaa 63
           |||||||||||| ||  |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcattaagta-atatttctcttcatttttatccttctaaactgtattcatttaaa 262

                                                                       
Query: 64  agtccattgaaatgacaacagttttttttttaagccaaaaaaccttttttattggggaat 123
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agtccattgaaatgacaatagttttttttttaagccaaaaaaccttttttattggggaat 322

                                                                       
Query: 124 tgagtccactgacataagagatataaaagaatagtgattgttgcttcctgttattttgat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgagtccactgacataagagatataaaagaatagtgattgttgcttcctgttattttgat 382

                                                                       
Query: 184 gtagtttttatgtttgtgtggctatcttcttttgggtttgcttaaatattactttcttgc 243
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gtaatttttatgtttgtgtggctatcttcttttgggtttgcttaaatattactttcttgc 442

                      
Query: 244 attttataggg 254
           |||||||||||
Sbjct: 443 attttataggg 453


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 654
Length adjustment: 9
Effective length of query: 246
Effective length of database: 645
Effective search space:   158670
Effective search space used:   158670
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)