BAC Information

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BAC

Clone NameMSMg01-346K12
Chromosome1 (Build37)
Map Location 176,303,517 - 176,303,981
singlet/doubletsinglet
Overlap genenone
Upstream geneAim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274
Downstream geneGA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2, Grem2, Rgs7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346K12.T7 (MSMg01no346_k12.b1)MSMg01-346K12.TJ (MSMg01no346_k12.g1)
ACCAG459190AG459191
length755733
length of high quality
(start - end)		485 (38 - 522)465 (67 - 531)
definitionCHROMAT_FILE: MSMg01no346_k12.b1 PHD_FILE: MSMg01no346_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:24 2005CHROMAT_FILE: MSMg01no346_k12.g1 PHD_FILE: MSMg01no346_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAG
ATTCTAACCACCAAAAAACCAAACAACTCAATCAAATGAATGAGGTATAG
AATGAAATCAAGAATTCACAACAGAGGAATTTTGCATGGCTGAGAAACAA
GTAAAGAAATGTTCAAAGTCCTTAGTGATCAGAGAAATGCAAATCAAAAT
AAGCCTGTGATTCCACAGTACACTAATCAGAATGGCTAAGATCAAAACCT
CAGGTGACATCACATGTTGTCGAGGATGTGGAGAAAGAGGAATATTCCTA
CATTGCTGGTGGAATTGCAAACTGGTACAGCCACTCTGGAAATCAATCTG
GAGGTTCCTCAGGAAACTGGAAATAGATCTACCTGAAGACCCAGCAATAC
CACTCTTGGGAATATACACAAAAGATGCCCCACTATCCCACAGGGGCACA
TGTTTCACTATGTTCACAGTAGCCTTATTTTTGATAGCTAGAAGCTAGAA
ACAACCCAGATGTTCCATGACAGGAGAATGCTTACCAAAAAATGTGGTTT
ATTTAACCAGTGGAGTACTACTCACCGATTAAGAATGAGGATATTCTTGA
GTTTGCCGGTAATACAAGGAATCTAAAAAAAATCTTCCCGAGGGTGGTAT
CTCTGAACCTAAAGGACACGCCTGGGCACACCTTCTTTTATTAATTTGGA
TTTACGCCCCAAAAATTTAAACATACTATATTCTATCCATTATTTGCACA
CTATT

GTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTCCCATCATTCAGTTCCTGCATTCTTTCTGCCT
CCTCTTCTGTAATTCATCTAGAGTCTTGATAGTGGGGCATAAATCCAATT
TAGGGCTGAGCTATTGTGCGATAACTATTTTCAAATTGATTGCTGGGGTA
TTTTACCTTCCGTGCTTGCCTCCTCTCAGAGTATTGAAATCAAAGCAAGT
TGTTAAATATTTCTTTAATAATTTAGGATCTAGATGTCTTCTTCAATAAG
AAAAATGCTTCAGGTTTCTCTAGCATTTGTAAGCCATTGCACATGTGTAG
TCTTCAAATTACTTATAGATCAGTCTCTGCATTTACTTTATGAATATTTA
GAGCCAATTTTTTATTGAAGAGTGTCTGTGTTAGAGCTAACTATCTCTTT
ATTTATCCTTCAGCGTGTTATTTTATGTTATGATTTTCATGTTTATGTGT
GAGTATGAATTTTCACGTATATGTATGGGCGGCCACGAGTGGACATGCAC
ATGACTGGACACACCCATGAAGGCCCCAAGCTGACATTAATTGCCTTCCT
CAACCCTTCCTAGTCCATTGATTGAGGCAAAGTCTCTGGTGAGGTGAGAT
ATGTCCCCTTCCTATAACCTATTTAAACTTTTGCCCAGGGATGCCTTCCC
TGGTCCCCCCCGGTGTTATGTAGTCTTTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_k12.g1 MSMg01no346_k12.g1 CHROMAT_FILE:
MSMg01no346_k12.g1 PHD_FILE: MSMg01no346_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:24 2005
         (465 letters)



>mm_chr1_176303317_176304181
          Length = 865

 Score =  899 bits (465), Expect = 0.0
 Identities = 465/465 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcccatcattcagttcctgcattctttctgcctcctcttctgtaattcatctagagtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcccatcattcagttcctgcattctttctgcctcctcttctgtaattcatctagagtct 260

                                                                       
Query: 61  tgatagtggggcataaatccaatttagggctgagctattgtgcgataactattttcaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatagtggggcataaatccaatttagggctgagctattgtgcgataactattttcaaat 320

                                                                       
Query: 121 tgattgctggggtattttaccttccgtgcttgcctcctctcagagtattgaaatcaaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgattgctggggtattttaccttccgtgcttgcctcctctcagagtattgaaatcaaagc 380

                                                                       
Query: 181 aagttgttaaatatttctttaataatttaggatctagatgtcttcttcaataagaaaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagttgttaaatatttctttaataatttaggatctagatgtcttcttcaataagaaaaat 440

                                                                       
Query: 241 gcttcaggtttctctagcatttgtaagccattgcacatgtgtagtcttcaaattacttat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcttcaggtttctctagcatttgtaagccattgcacatgtgtagtcttcaaattacttat 500

                                                                       
Query: 301 agatcagtctctgcatttactttatgaatatttagagccaattttttattgaagagtgtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agatcagtctctgcatttactttatgaatatttagagccaattttttattgaagagtgtc 560

                                                                       
Query: 361 tgtgttagagctaactatctctttatttatccttcagcgtgttattttatgttatgattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtgttagagctaactatctctttatttatccttcagcgtgttattttatgttatgattt 620

                                                        
Query: 421 tcatgtttatgtgtgagtatgaattttcacgtatatgtatgggcg 465
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcatgtttatgtgtgagtatgaattttcacgtatatgtatgggcg 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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