BAC Information

Click to search

BAC

Clone NameMSMg01-346M13
Chromosome1 (Build37)
Map Location 84,038,312 - 84,038,499
singlet/doubletsinglet
Overlap gene5033414K04Rik
Upstream geneLOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
Downstream geneLOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346M13.T7 (MSMg01no346_m13.b1)MSMg01-346M13.TJ (MSMg01no346_m13.g1)
ACCAG459287AG459288
length734768
length of high quality
(start - end)
560 (37 - 596)236 (66 - 301)
definitionCHROMAT_FILE: MSMg01no346_m13.b1 PHD_FILE: MSMg01no346_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:33 2005CHROMAT_FILE: MSMg01no346_m13.g1 PHD_FILE: MSMg01no346_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATAT
ATTTCCTATATATGAGCTGACTGGCACATATTAGTAAATAGTATAATCTG
CTATTAAGCATAATATATCTTAAGGCTTATTTTTACTTTTATTTGTGTAT
ATTCTTGTTATATCTATTGGTAAGGCTTATGTCGTGTGTTTGGTGTGCCC
AGGAGGCCAAAAGAGGGTTTTATATCCCCTTTGAGCTCATATAACAGGCA
GTTGTGAGCTGATCAATATATGTGCTGAGACTCAAACTTGGGTTCTCTGA
GAGAACATTATAGTACTCCTAACGGCTGAGTCACAGTTCAAGCCCTAAAA
CTAGTTTTAAAAAGAGATGTCCTTTATATTGAAATTCAGGGAACATGTAA
TCAGGTGTACAGAATCACTCTTGCAACCCAAACATTTAGGAAGGTGAAGA
AGGACTATCATAAATTTAAATCCAACCTAGACTACAAACTGAGTTGTAGG
CTAGAATAGGCTAGAGAGTAAGAGTGAACCTCTGTCTCANACGCCCATTT
TAATGCTATGCTTTCAATGAATGTCTTAGTGTTGTGATGTGCCAAGCCTT
GTGTTTCAATGAGACTGTGAAGAATAATCAGGGCATTCTTCCAGGCTTGT
CAAACCTGTGGGAGCCACGTTCACATATAAGACTGTCTACCACCATGTAT
CTATAACATTATTTTGATGTTTAATGATACTTAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCTGTATAACTTTTAGAAAGAAGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCATATGAAAGAAAGCTGAAA
ATATATCCAAAGAATTCCCCTTCTACCAGACTACCTTTCTCTCACATATA
AACTTGATTATTTCTAGTTTCAAAAAGTAGAACGAATGAATATACTTTGT
ATTTTCCCTTTAGGTACCCAAATTAGTTGTTTCCTTGTGTGTGTGTGTGT
GTTTGTATGTATTTTTATAGAATACATAGAATACATACAACAGGATGCTC
TATCACCCTCACCTCCACTGAGCCACTTATCTCTTACAGGATTCTAAAAC
AGACACTCAGAATCCCCCTAGTAAGAGCAGCCAATCATTGTGCCTCAAGC
TTCCATCTCCCACCAATCTAGTTTTTGTCTCTGCGATTGAGACTGTCCTA
ACGCGATAAATTACAGTCCTCCCCTACTCCGTGACCCGCACTCCTATGTT
CCACATTATCTTTTTTCTTACTCCCTCCCTGCGCCTACTTATTCCAAGTC
GTTCCCTTCCCCTGTGGCTCCAGCCTAATACCTCCTCTGCCATATGCATT
TTCTTTTTTCTATTTACCCCTGCGTTCCGTCTCCCCCCCCCCCCTATTCC
CCCCCTTTCTCTTCTTTCTCCCCCTCTTTCACCCCCCCCCATCTTATTTC
TTTCTTTCCCCCCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_m13.g1 MSMg01no346_m13.g1 CHROMAT_FILE:
MSMg01no346_m13.g1 PHD_FILE: MSMg01no346_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:33 2005
         (236 letters)



>mm_chr1_84038048_84038683
          Length = 636

 Score =  340 bits (176), Expect = 3e-98
 Identities = 185/188 (98%)
 Strand = Plus / Minus

                                                                       
Query: 49  gtgtgtgtgtgtgtgcgcatatgaaagaaagctgaaaatatatccaaagaattccccttc 108
           ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 452 gtgtgtgtgtgtgtgtgcatatgagagaaagctgaaaatatatccaaagaattccccttc 393

                                                                       
Query: 109 taccagactacctttctctcacatataaacttgattatttctagtttcaaaaagtagaac 168
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 392 taccagactacctttctctcacatataaacttgattatttctagtttcaaaaagtagaat 333

                                                                       
Query: 169 gaatgaatatactttgtattttccctttaggtacccaaattagttgtttccttgtgtgtg 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gaatgaatatactttgtattttccctttaggtacccaaattagttgtttccttgtgtgtg 273

                   
Query: 229 tgtgtgtg 236
           ||||||||
Sbjct: 272 tgtgtgtg 265


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)