BAC Information

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BAC

Clone NameMSMg01-346M23
Chromosome1 (Build37)
Map Location 179,095,685 - 179,278,904
singlet/doubletdoublet
Overlap geneAkt3
Upstream genePld5, Cep170, Sdccag8, LOC666235
Downstream geneZfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584, EG545391, LOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346M23.T7 (MSMg01no346_m23.b1)MSMg01-346M23.TJ (MSMg01no346_m23.g1)
ACCAG459307AG459308
length769782
length of high quality
(start - end)		470 (33 - 502)447 (64 - 510)
definitionCHROMAT_FILE: MSMg01no346_m23.b1 PHD_FILE: MSMg01no346_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:35 2005CHROMAT_FILE: MSMg01no346_m23.g1 PHD_FILE: MSMg01no346_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(179,278,439 - 179,278,904)(179,095,685 - 179,096,127)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTCATGC
TTCTAAATAGAGCCTTCTCTAATTAAATTAGATACAGAAGCATCTACATA
CACACATTTTCAAAACATAATGAGAATACTTATATAAAGCATTCTACATT
GGGTTCCCGAGACAAGGCTTGGTGGGATGTCTGAATTCCTTGCAACACGC
CATTCCTGGCTAGGTGCCGACAGCCCTCGTGGCTTAACCATTGGCTTGAG
ATACTGTACCAAAGGGCCTTTCAGGCAGGATGCAAAAAGCCATCAATATG
GTGGCAAACCCAGGCATACCCTCAGTCGGGTACACATGAGTGAGCCCCAC
GAGGCCAGTCCAACAGAACTCACCACAGTGGTGTGAAGAAATCCATCCAG
CAGGCTGGGGCTCAGGGCAGGATAGGGCTTAGTTGACACTATTAAAGAAA
GAGGTGGCAGAACAGGCCAGTGGCCTTGGTGGATGAGAGGCACAGGTATA
GCTCACGATGTAGTGGCTGGAGGGCATGCAAGAATTCAGGAGTCATAGGA
CAACAAAGGACAGTTGGTCCCTGAAGGTTAACAAAAATGGACCTGTGTTG
TATGTTGAAACCATATAAACCCTGAAACCTTTCTTCAAAAGGCGGAAAGC
CCAGTCTCCTTTTCTCCTCCCGAATGGATCTTGAACTGGGGTTAAACTTT
AAAAAGCTGAAAAAAAAAAAATTGCCCAAAAATATTTAGGGGCGCTTTTC
CTTAAAAAATTTCCCCCCC

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXATCTGTATTCATAGATGGCTGTCACATCTTGACAAAG
AAAGGAAGGAGGGGTTGTAGGTCGATTTAAGCCTATCTTTTCTATGTTTT
AATAGAAGGCAGTCAGTGCCCCCCCCATCTCCAGATCGAAGAATCCAGAT
TAAATTTTCTACAGAAATTCTTACTCATTCACTATATTGCATTAAATATC
TCATCTTGAAATTCTATTAACTTAAGGATTTGATCCCTATACTTAAAAGT
AGAGACTCATCAACACTTATAGAAAGAGTAAAATAATCCCTTATTTTCCA
AGTATCCAAAACAGTTTTAAAACATGTAAGTAATTCTAAACATTATTGTA
TGTAAGAACATTTTTCTGCATCATTGTGATACTGCTCAGTCAGACAGGAG
AGGGAAATTGGGCCCTGATACCCACCACAGATTTACACACCGTANACAAA
GCAAGTAAGACAGTGGAAGAGTATTTGCCTAATATATGCAAGGCTTTTTG
GTTTGTACTCAGCATCTCAGTAGGACTGGGGAGAAAGCAAATCTTAGAAC
ATAACAACGACAAGAAATTTCTAGAAAAATTGAGGAGAGGGGAGGAAATT
CCAACACCATAAACCTAACCCTTTATTTGAAAAGGCGAATAAAACTTCTT
TTTACTTTACAAAAAGTTAAAAGCCCCGCGGATGGGTTTTCTTAATTTTG
GGGCCCAACGGGTTAAGAATTTTTTTTATCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_m23.b1 MSMg01no346_m23.b1 CHROMAT_FILE:
MSMg01no346_m23.b1 PHD_FILE: MSMg01no346_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:35 2005
         (470 letters)



>mm_chr1_179278235_179279104
          Length = 870

 Score =  886 bits (458), Expect = 0.0
 Identities = 464/466 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtcatgcttctaaatagagccttctctaattaaattagatacagaagcatcta 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gaattcagtcatgcttttaaatagagccttctctaattaaattagatacagaagcatcta 611

                                                                       
Query: 65  catacacacattttcaaaacataatgagaatacttatataaagcattctacattgggttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 catacacacattttcaaaacataatgagaatacttatataaagcattctacattgggttc 551

                                                                       
Query: 125 ccgagacaaggcttggtgggatgtctgaattccttgcaacacgccattcctggctaggtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ccgagacaaggcttggtgggatgtctgaattccttgcaacacgccattcctggctaggtg 491

                                                                       
Query: 185 ccgacagccctcgtggcttaaccattggcttgagatactgtaccaaagggcctttcaggc 244
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ccgacagccctcgtggtttaaccattggcttgagatactgtaccaaagggcctttcaggc 431

                                                                       
Query: 245 aggatgcaaaaagccatcaatatggtggcaaacccaggcataccctcagtcgggtacaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aggatgcaaaaagccatcaatatggtggcaaacccaggcataccctcagtcgggtacaca 371

                                                                       
Query: 305 tgagtgagccccacgaggccagtccaacagaactcaccacagtggtgtgaagaaatccat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tgagtgagccccacgaggccagtccaacagaactcaccacagtggtgtgaagaaatccat 311

                                                                       
Query: 365 ccagcaggctggggctcagggcaggatagggcttagttgacactattaaagaaagaggtg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ccagcaggctggggctcagggcaggatagggcttagttgacactattaaagaaagaggtg 251

                                                         
Query: 425 gcagaacaggccagtggccttggtggatgagaggcacaggtatagc 470
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gcagaacaggccagtggccttggtggatgagaggcacaggtatagc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no346_m23.g1 MSMg01no346_m23.g1 CHROMAT_FILE:
MSMg01no346_m23.g1 PHD_FILE: MSMg01no346_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:35 2005
         (447 letters)



>mm_chr1_179095481_179096327
          Length = 847

 Score =  843 bits (436), Expect = 0.0
 Identities = 441/443 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gtattcatagatggctgtcacatcttgacaaagaaaggaaggaggggttgtaggtcgatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gtattcatagatggctgtcacatcttgacaaagaaaggaaggaggggttgtaggtcgatt 264

                                                                       
Query: 65  taagcctatcttttctatgttttaatagaaggcagtcagtgccccccccatctccagatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taagcctatcttttctatgttttaatagaaggcagtcagtgccccccccatctccagatc 324

                                                                       
Query: 125 gaagaatccagattaaattttctacagaaattcttactcattcactatattgcattaaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaagaatccagattaaattttctacagaaattcttactcattcactatattgcattaaat 384

                                                                       
Query: 185 atctcatcttgaaattctattaacttaaggatttgatccctatacttaaaagtagagact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atctcatcttgaaattctattaacttaaggatttgatccctatacttaaaagtagagact 444

                                                                       
Query: 245 catcaacacttatagaaagagtaaaataatcccttattttccaagtatccaaaacagttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 catcaacacttatagaaagagtaaaataatcccttattttccaagtatccaaaacagttt 504

                                                                       
Query: 305 taaaacatgtaagtaattctaaacattattgtatgtaagaacatttttctgcatcattgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taaaacatgtaagtaattctaaacattattgtatgtaagaacatttttctgcatcattgt 564

                                                                       
Query: 365 gatactgctcagtcagacaggagagggaaattgggccctgatacccaccacagatttaca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gatactgctcagtcagacaggagagggaaattgggccctgatacccaccacagatttaca 624

                                  
Query: 425 caccgtanacaaagcaagtaaga 447
           ||| ||| |||||||||||||||
Sbjct: 625 cacggtaaacaaagcaagtaaga 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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