Query= MSMg01no346_o07.b1 MSMg01no346_o07.b1 CHROMAT_FILE:
MSMg01no346_o07.b1 PHD_FILE: MSMg01no346_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:42 2005
(534 letters)
>mm_chr1_82556420_82557353
Length = 934
Score = 540 bits (279), Expect = e-157
Identities = 365/397 (91%), Gaps = 13/397 (3%)
Strand = Plus / Minus
Query: 1 tgtctccctgaggctactcagcccatttaggaaaaagctggtatccctaaaaaggaagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tgtctccctgaggctactcagcccatttaggaaaaagctggtatccctaaaaaggaagtt 331
Query: 61 gggcctttttattacttgataatacaaaatgaattctggtcattttaaatcaccatgacc 120
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 330 gggcctttttattacttgatgatacaaaatgaattgtggtcattttaaatcaccatgacc 271
Query: 121 gcttgtcactcctcacacccctaactgaaaactttcttcttcttagcaagtctctttcct 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 acttgtcactcctcacacccctaactgaaaactttcttcttcttagcaagtctctttcct 211
Query: 181 actttgatctttcttctttcttctttcctcttctttc-tccttc-tccttc-tccttctc 237
||||||||||||||||||||||||||||||||||||| || ||| || ||| |||| |||
Sbjct: 210 actttgatctttcttctttcttctttcctcttctttcctc-ttcctc-ttcctcctcctc 153
Query: 238 cttctccttctccttctccttctccttctccttctccttctccttctccttctccttctc 297
|| ||||| ||||| ||||| ||||||||||| ||||| ||||| |||||||| |||||
Sbjct: 152 ctcctcctcctcctcctcctcctccttctcctcctcctcctcctcctccttcttcttctt 93
Query: 298 cttctccttctccttctccttctccttctccttctccttctccttctccttctccttctc 357
|||||||| ||||| ||||| |||||| ||||||||||||||||||||||| |||||
Sbjct: 92 cttctcctcctcctcctcct---ccttcttcttctccttctccttctccttct--ttctc 38
Query: 358 cttctccttctccttctccttctccttctccttctcc 394
|||||||| ||||| ||||| ||||| ||||||||
Sbjct: 37 cttctcctcctcctcctcctcctcct---ccttctcc 4
Score = 80.0 bits (41), Expect = 4e-19
Identities = 68/77 (88%), Gaps = 4/77 (5%)
Strand = Plus / Minus
Query: 461 ttcttc-ttcttc-ttcttcttc-ttcttcttcttctt-cttcttctcctcctcctcctc 516
|||||| |||||| ||| ||||| ||| ||||| |||| || || |||||||||||||||
Sbjct: 200 ttcttctttcttctttcctcttctttcctcttcctcttcctcctcctcctcctcctcctc 141
Query: 517 ctcctcctcctccttct 533
|||||||||||||||||
Sbjct: 140 ctcctcctcctccttct 124
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 143
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 2
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no346_o07.g1 MSMg01no346_o07.g1 CHROMAT_FILE:
MSMg01no346_o07.g1 PHD_FILE: MSMg01no346_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:42 2005
(539 letters)
>mm_chr1_82492581_82493520
Length = 940
Score = 967 bits (500), Expect = 0.0
Identities = 530/540 (98%), Gaps = 1/540 (0%)
Strand = Plus / Plus
Query: 1 atctggttttcctcttggtttggacaccagggagctacacaaatgaatagactgggttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctggttttcctcttggtttggacaccagggagctacacaaatgaatagactgggttgg 260
Query: 61 gtatgagtaacagccattttgacatctctatgggcaggtccataggttacattgtctctt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 gtatgagtaacagccattttgacatctctatgggcaggtccataggttacattgtctcgt 320
Query: 121 gttttctcaatggctcagcaatgatggtactattattgctaatctaactggtaaagtaac 180
||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 321 gttttttcaatggctcagcaatgatggtactattatcgccaatctaactggtaaagtaac 380
Query: 181 tcaaagcttgtccctctgagggctcatgtcctacgaaaatcaaaagttccacttttgtaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaaagcttgtccctctgagggctcatgtcctacgaaaatcaaaagttccacttttgtaa 440
Query: 241 caacacctcatagttattgcttcatgtacttttaaactaaattaagagagctaaagaaaa 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 caacacctcatagttattgcttcatgtacttttaaactaaactaagagagctaaagaaaa 500
Query: 301 atgatattacacttgtctgagatccagagttacttcttatcaaatataaaggtacttgtc 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgatattacacttgtctgagattcagagttacttcttatcaaatataaaggtacttgtc 560
Query: 361 tttatgtgttgtcaaaacaagagccaaagacagtattttatctccaaacttcaaaattaa 420
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 tttatgtgttgtcaaaacaagagccaaagacagtattttatcttcaaacttcaaaattaa 620
Query: 421 tgctatagcccaaggtacaatgaatgtgacaaaagg-aaaaaaaaacttaaataaacctt 479
||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 tgctatagcccaaggtataaggaatgtgacaaaagggaaaaaaaaacttaaataaacctt 680
Query: 480 gttctgtcagccataaccctgaaagtaattttttgaagttcatatgcctgtcaaatatgc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gttctgtcagccataaccctgaaagtaattttttgaagttcatatgcctgtcaaatatgc 740
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 940
Length adjustment: 10
Effective length of query: 529
Effective length of database: 930
Effective search space: 491970
Effective search space used: 491970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
