Query= MSMg01no347_c24.b1 MSMg01no347_c24.b1 CHROMAT_FILE:
MSMg01no347_c24.b1 PHD_FILE: MSMg01no347_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:05 2005
(407 letters)
>mm_chr1_64065315_64066122
Length = 808
Score = 723 bits (374), Expect = 0.0
Identities = 398/406 (98%), Gaps = 3/406 (0%)
Strand = Plus / Minus
Query: 4 ggaattct-taagtctctgcaagggaacaattgggccgtctttgtacgcttgctgtggta 62
|||||||| | ||||| ||||||||||||| ||||||||| ||||| |||||||||||||
Sbjct: 608 ggaattctct-agtctatgcaagggaacaagtgggccgtccttgtatgcttgctgtggta 550
Query: 63 gcatacatatcacaaacagaaattctaaacactgggatcgggtttcctagtacgtgtgta 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gcatacatatcacaaacagaaattctaaacactgggatcgggtttcctagtacgtgtgta 490
Query: 123 gttttcttgtcacctctttgactgcccttctgggtgcccaaacacagtgcccccctactt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gttttcttgtcacctctttgactgcccttctgggtgcccaaacacagtgcccccctactt 430
Query: 183 ctcaagagtctaccttgtagctggttagttcacgcctgagatgggcttttcccagcttcc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ctcaagagtctaccttgtagctggttagttcacgcctgagatgggcttttcccagcttcc 370
Query: 243 ttccggctgtttctccactggctgaattcctcaaaaactaatcaatgtgttctcagaaaa 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ttccggctgtttctccactggctgaattcctcaaaaactaatcaatgtgttctcagaaaa 310
Query: 303 cagaacctggctaggaatgtttatcattttctttgctaagtgctg-tttttttacacgtt 361
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 309 cagaacctggctaggaatgtttatcattttctttgctaagtgctgttttttttacacgtt 250
Query: 362 ggacctctgatttcctacaattcttggagagcaccggcaggaagag 407
|||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 249 ggacctctgatttcctacaattcttggagagcactggcaggaagag 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 808
Length adjustment: 9
Effective length of query: 398
Effective length of database: 799
Effective search space: 318002
Effective search space used: 318002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no347_c24.g1 MSMg01no347_c24.g1 CHROMAT_FILE:
MSMg01no347_c24.g1 PHD_FILE: MSMg01no347_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:05 2005
(582 letters)
>mm_chr1_63871504_63872485
Length = 982
Score = 957 bits (495), Expect = 0.0
Identities = 527/544 (96%), Gaps = 10/544 (1%)
Strand = Plus / Plus
Query: 1 acatgatcctgtttgcctgaaggatggtttgttataaaggatccaaaatggcttccctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 acatgatcctgtttgcctgaaggatggtttgttataaaggatccaaaatggcttccctca 270
Query: 61 cagatctaggccttgctggggttggctcagattagatcagtgactgtagtgctcacttgg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 271 cagatctaggccttgctggggttggctcagattagatcagtgactgtagtgcccacctgg 330
Query: 121 acagtggagaagctaaacttctacagaatggaaactctcatggctttctatgacctagtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 acagtggagaagctaaacttctacagaatggaaactctcatggctttctatgacctagtc 390
Query: 181 tcaaaatcccgttgtattatattattggtactgtttggagaaagaagccagagaatctaa 240
||||| |||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 391 tcaaa----------attatattattgatactatttggagaaagaagccagagaatctaa 440
Query: 241 taaaattcaaggaaaggggagatagatcctgcctcttaatggaagcaatgccaaagaatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaaattcaaggaaaggggagatagatcctgcctcttaatggaagcaatgccaaagaatg 500
Query: 301 tgcagccatgttttaaaaactggacaaataccatcaactagtgtttatataagttaagag 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 tgcagccatgttttaaaaactggacaaataccatcaactagtgtttatataaattaagag 560
Query: 361 ctgagaacatctgtgaatatcatatttttattttcaatataaatacttgatgtaaaattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgagaacatctgtgaatatcatatttttattttcaatataaatacttgatgtaaaattt 620
Query: 421 aaaaaccatattttcctctctactcatatatganattcaaatgttttaatgcgggttttt 480
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 621 aaaaaccatattttcctctctactcatatatgaaattcaaatgttttaatgtgggttttt 680
Query: 481 ttcaagtggtttgatcataatccattgtgaaaatcctattgcattttatctctctctctc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcaagtggtttgatcataatccattgtgaaaatcctattgcattttatctctctctctc 740
Query: 541 tctc 544
||||
Sbjct: 741 tctc 744
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space: 555984
Effective search space used: 555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
