NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCCAGTTTGTCGGCTTCAAGGATTTTCTGGGACATTGGAACAC
TGGCAAAGGCTTAGCTATTTCAGAATTCGATCTTAAAAGGCACTTATAAT
AAGATAATACTAAAAGAGAGCATGTGGATCCATATAGGAGGATAGGGTAT
GAGTATATGGGTTATGAGAACGCCAAAGTTCCAGGACGTGAGTTTCCATG
AAACTCTTTGCCTTGTGAGTGCTCCCAGGCCTCTTGGCCTGCCAAGCAAA
CTTCACTGGAGTGTGCGTAGCACTCCTGTAATTCTTTAATTACAGGATTT
TTGTGTTTCCTCTTTAAGGACTTTTACCTGTTTAACTGTGTTCTCCTGTA
TTTCTATAAGGGAGTTACTAATGTCCTTCTTAAAATCCTCCACCAGCATC
ATGAGATATGATTTTAAATTTGAATCTTACTTTTCTGGTGTGTTGGGATA
TCCAGAACTCCCTGTGTTGGGAGTACTGAGTTCTGATGATGCCAAATATT
CTTGTGTTCTCTTACTAAGACTCTTGAACTTTTCTCTTCTCTTTTACTAA
TCCTGGTTGTCATATGTTCCTGCTGCCCTTCGACTGCACTTTTGTTCTTT
ATCCCGTATCCTCGTTCACTCGTTTCCAAACACTTATTTTTCCCCTTCCT
GTATTCTGTTCTCCTTATTCCCCAACTTCCTCCTCCCCTGGTCATTATTC
TCTCC

CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCCAAAAAAGATTCATGGAAATT
CCAAAATGTATTTAAGATACAAACAATTTCAAAAACTGTGCTTGCTGTTA
AATAATTTTGATATAAGTAATCATTTATATGGACTTGATAAAATTATTTG
CACATTTGCATACAAGTAAATTATCAAATATGAGAAAAGTGTATTAGTAT
AAAAATAATAATGTTTTTATAATTACAATTTGGTTGGAAGTAGTGTTTGA
TTTGGTTTTTCATTTACATGAAAGGTTAAAACAGATGCTAGGAACTTACT
TGTAATCCTCAAGAGCAAGCAAAGAACGTGAATATCCAGAAAAAGCAGAT
GGTCAATCAATTACAATAGCTCAATCTCAAAAATAACCAGCACTGAGTAT
AACCCCAGTGGGAAATCAGAAATTAAGAACAGTTGCTTTGTAGTAACGTT
TGTTTAATTCTGAGGATCTTTTTAAAGGTACTATATTGCATCAAGTTGTT
TTAAAGAAACACAAAGCAAGCATTGATCTCATTTAGCATACTTCCTTCTG
ATTAAGAGTTTCTGTCAAGTTCCCTGGGGAAAGTTTGATCTTTGTGGTCA
GGATACCTCCAACCAACAGTCTAGCGAATAGCAACAGCCAGAGCAGAAGG
AGTAGCCAGGATACCATCTAAACCTGAAAAGGCACTGGGATTTTTATATC
TTTTGAAAN

Query= MSMg01no347_e13.g1 MSMg01no347_e13.g1 CHROMAT_FILE:
MSMg01no347_e13.g1 PHD_FILE: MSMg01no347_e13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:13 2005
         (568 letters)



>mm_chr1_27025503_27026470
          Length = 968

 Score = 1021 bits (528), Expect = 0.0
 Identities = 558/568 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctccaaaaaagattcatggaaattccaaaatgtatttaagatacaaacaatttcaaaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 ctccaaaaaagattcatggaaattccaaaatgtatttaagatacaaacaatttcaaaaat 260

                                                                       
Query: 61  tgtgcttgctgttaaataattttgatataagtaatcatttatatggacttgataaaatta 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgcttgctgttaaatacttttgatataagtaatcatttatatggacttgataaaatta 320

                                                                       
Query: 121 tttgcacatttgcatacaagtaaattatcaaatatgagaaaagtgtattagtataaaaat 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgtacatttgcatacaagtaaattatcaaatatgagaaaagtgtattagtataaaaat 380

                                                                       
Query: 181 aataatgtttttataattacaatttggttggaagtagtgtttgatttggtttttcattta 240
           |||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 381 aataatgtttttttaattacaatttggttggaaacagtgtttgatttggtttttcattta 440

                                                                       
Query: 241 catgaaaggttaaaacagatgctaggaacttacttgtaatcctcaagagcaagcaaagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catgaaaggttaaaacagatgctaggaacttacttgtaatcctcaagagcaagcaaagaa 500

                                                                       
Query: 301 cgtgaatatccagaaaaagcagatggtcaatcaattacaatagctcaatctcaaaaataa 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catgaatatccagaaaaagcagatggtcaatcaattacaatagctcaatctcaaaaataa 560

                                                                       
Query: 361 ccagcactgagtataaccccagtgggaaatcagaaattaagaacagttgctttgtagtaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccagcactgagtataaccccagtgggaaatcagaaattaagaacagttgctttgtagtaa 620

                                                                       
Query: 421 cgtttgtttaattctgaggatctttttaaaggtactatattgcatcaagttgttttaaag 480
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtttgtttaattctgaggatctttttaaaggtactatattgcatcaagttgttttaaag 680

                                                                       
Query: 481 aaacacaaagcaagcattgatctcatttagcatacttccttctgattaagagtttctgtc 540
           ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 681 aaacacaaagcaagcattgatctcatttagcgtacttccttctgattaaaagtttctgtc 740

                                       
Query: 541 aagttccctggggaaagtttgatctttg 568
           ||||||||||||||||||||||||||||
Sbjct: 741 aagttccctggggaaagtttgatctttg 768


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)