NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTAGAGACACTCAAGTTTTCCCTCTACATTGGAATCCTGAAGA
AGTCGGTCTAACACCAGGAAAGGAATGTCTTAGCAACAGGATAGATTCAC
TTAACACCAAGAATCAGAGTTAACAGGTAAAAAGTAATAGCTTTCTTATT
CATTTCTTGATCCAATCAAGAAAACCCCATCCTGTCTGCCCAGCTCCTTA
GGTTATATTTGATTCTAGATATGATGAAGCTCATGACCAAGATTCGCCAG
GACAACAGAGGTTTATAAACATTATATTTTTTCCTACAACTAAATGTTAT
TTTCTTTCTACAAACTCCTCTTTGTCTTTTCAAAAAGGTCTCCCTTCTTC
AGGGAGATGTTCTCTTATTCTTATAATGACAACTGGGTTTGTTTTCAAAT
ATATTTCTTTTATACGCATCTGATGTTATTAATATCCTTTTAGCCATTAC
TTATGTGACATATGGTAAAATTTTAACATAAAATGCTACCACTGATTTTT
TTCAAGTATTATTAGACTTAACATTGATTGTTTTCTTCCAAGAATCATTC
AGAAATCCACTTTGTCTGATTTACTTTTGCTTTAAGATTACAGACTCTCT
AGAGNNNNTTCCATGAAAGTTATGAAGACTTTTCNANNNGCNNTGTCTAT
ATTGAAAAGAATAGTAGTACACTCGCTAGTTTTGTACCAATTTGGCCTAA
ACTATAGTAACC

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAATTAGAGGATGAAGAATAAAAA
AAAAATACTGACTGCCCTGAGAACATGAGCCCCGGCTAGATGGTCTAATT
CCCCGGAACTTTGGGGAAAAACAACCACAAAATGTTTCAATGTCCCAGGT
GCCTTGAAGTAAATATCTGCCCCTAGACTTCCCCTATTTCCTCTCTGATC
CTCCCTCTAGGTTGTGGTTTTTGCCTTTATAAGCCTGCTGGAAAATAGGG
TCTGGGTCGAACTCCTCTACCCCTGCGTGGTGTATGAGTTTCGGCCTCAG
CATGGTGGTTTGTGTGCCATTAAAGCCTCGTGTGTTTGCAGCAAGCTTGA
CTGTGTGGCTTTCTGGGCTGGCGATCCCTGAGACTTGAGTGAGGGTCTCC
CTTCGGGGGTCCTTCAAGCAGACAAAAGTACATAGACATAAGACATGTTT
TCTGTATTTAAGGAACAAAATAAAAGTTCTCTGTGGCTAGAATAGAATAT
AATGAGCAAAGAGGTAATCTGTGGACAGACAGTTAACTGGCCAGAATACA
TCCTGAGTTTTCAGCTAACTGAGATTGAATATCCATTTTACATTTTAGAT
TTATCAATTGCGCCTGTGTTTGTGCGTCCCCGCGCGTTGAAAAATGATTT
TACCCGTCCTATTCCCTCTTAAACCTTTACCTTTTTCCCCCCTGTTTGCT
TTTTTCTT

Query= MSMg01no347_l11.b1 MSMg01no347_l11.b1 CHROMAT_FILE:
MSMg01no347_l11.b1 PHD_FILE: MSMg01no347_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:47 2005
         (561 letters)



>mm_chr1_179752608_179753571
          Length = 964

 Score =  884 bits (457), Expect = 0.0
 Identities = 536/565 (94%), Gaps = 11/565 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctagagacactcaagttttccctctacattggaatcctgaagaagtcggtcta 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctagagacattcaagttttccctctacattggaatcctgaagaagtcggtcta 263

                                                                       
Query: 64  acaccaggaaaggaatgtcttagcaacaggatagattcacttaacaccaagaatcagagt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acaccaggaaaggaatgtcttagcaacaggatagattcacttaacaccaagaatcagagt 323

                                                                       
Query: 124 taacaggtaaaaagtaatagctttcttattcatttcttgatccaatcaagaaaaccccat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taacaggtaaaaagtaatagctttcttattcatttcttgatccaatcaagaaaaccccat 383

                                                                       
Query: 184 cctgtctgcccagctccttaggttatatttgattctagatatgatgaagctcatgaccaa 243
           ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 384 cctgtctacccagctccttaggttatatttgattctagatatgatgaagttcatgaccaa 443

                                                                       
Query: 244 gattcgccaggacaacagaggtttataaacattatatttttt-cctacaactaaatgtta 302
           |||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||
Sbjct: 444 gatttgccaggacaacagaggtttataagcattatatttttttcctacaactaaatgcta 503

                                                                       
Query: 303 ttttctttctacaaactcctctttgtcttttcaaaaaggt---ctcccttcttcagggag 359
           |||||||||||||||||||||||||||||||||||||  |   ||||||||||| ||| |
Sbjct: 504 ttttctttctacaaactcctctttgtcttttcaaaaa--taatctcccttcttctggggg 561

                                                                       
Query: 360 a-tgttctcttattcttataatgacaactgggtttgttttcaaatatatttcttttatac 418
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 562 aatgttctcttattcttataatgacaactgggtttgttttcaaatatatttcttttacaa 621

                                                                       
Query: 419 gcatctgatgttattaatatccttttagccattacttatgtgacatatggtaaaattt-- 476
            ||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||  
Sbjct: 622 acatctaatgttataaatatccttttagccattacttatgtgatatatggtaaaatttga 681

                                                                       
Query: 477 taacataaaatgctaccactgatttttttcaagtattattagacttaacattgattgttt 536
           ||||||||||||||| |||||||||||| |||||||||||||| ||| ||||||||||||
Sbjct: 682 taacataaaatgctatcactgatttttt-caagtattattagaatta-cattgattgttt 739

                                    
Query: 537 tcttccaagaatcattcagaaatcc 561
           ||||  |||||||||||||||||||
Sbjct: 740 tcttttaagaatcattcagaaatcc 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 964
Length adjustment: 10
Effective length of query: 551
Effective length of database: 954
Effective search space:   525654
Effective search space used:   525654
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)