Query= MSMg01no348_e21.b1 MSMg01no348_e21.b1 CHROMAT_FILE:
MSMg01no348_e21.b1 PHD_FILE: MSMg01no348_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:33 2005
(546 letters)
>mm_chr1_97562398_97563346
Length = 949
Score = 766 bits (396), Expect = 0.0
Identities = 460/512 (89%), Gaps = 48/512 (9%)
Strand = Plus / Minus
Query: 38 tctttctttccttctgtgtcctgccagtctatgaggacaccataaaaagcggctttctcc 97
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 940 tctttctttccttctgtgtcccgccagtctatgaggacaccataaaaagcggcgttctcc 881
Query: 98 aaagtttatggtcacagaagtgaagtgggtctttactcttttttgtttgtttttgttggg 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 aaagtttatggtcacagaagtgaagtgggtctttactcttttttgtttgtttttgttggg 821
Query: 158 ggaggggacgcctgtaagatctattttctttctttctttctttctttctttctttctttc 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 ggaggggacgcctgtaagatctattttctttctttctttctttctttctttctttctttc 761
Query: 218 tttctttctttctttctttctttctttctttctttctttctttctttcttcctttcaagt 277
||||||||||| ||||
Sbjct: 760 tttctttcttt---------------------------------------------aagt 746
Query: 278 tagacatttcagtatcaataaggaaaattccttattcactcctctacggataaaactccc 337
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 745 tagacatttcagtatcaataaggaaaattccttattcactcctctacgtataaaactccc 686
Query: 338 gggtttcatggttacagttttagaagggaactgggaactgcgcctttacagaccatatct 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gggtttcatggttacagttttagaagggaactgggaactgcgcctttacagaccatatct 626
Query: 398 gctc---ttttttgagtttgtcaagatgtgttcaaaatctccgccccattaagttctgta 454
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 625 gctctttttttttgagtttgtcaagatgtgatcaaaatctccgccccattaagttctgta 566
Query: 455 aatatctcacttccttcctctctcccctggcttctctgcctttgaagtctatccgggagc 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatatctcacttccttcctctctcccctggcttctctgcctttgaagtctatccgggagc 506
Query: 515 agagcgagcgatttgtaacttcttgtctctga 546
||||||||||||||||||||||||||||||||
Sbjct: 505 agagcgagcgatttgtaacttcttgtctctga 474
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 949
Length adjustment: 10
Effective length of query: 536
Effective length of database: 939
Effective search space: 503304
Effective search space used: 503304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no348_e21.g1 MSMg01no348_e21.g1 CHROMAT_FILE:
MSMg01no348_e21.g1 PHD_FILE: MSMg01no348_e21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:33 2005
(444 letters)
>mm_chr1_97356737_97357581
Length = 845
Score = 822 bits (425), Expect = 0.0
Identities = 440/445 (98%), Gaps = 1/445 (0%)
Strand = Plus / Plus
Query: 1 ttgctttcttccttgtttgagccaggcttcctcttgtctcttggtacaccacatactgaa 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgctttcctccttgtttgagccaggcttcctcttgtctcttggtacaccacatactgaa 260
Query: 61 ggctagctgacctgtagcatgctggctgaccctttatccctac-tcccatcgctccacaa 119
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 261 ggctagctgacctgtagcatgctggctgaccctttaaccctacctcccatcgctccacaa 320
Query: 120 gatgctgagattgctgacattcacctgcctgtcttcttaaatggcttcaggggctctgga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgctgagattgctgacattcacctgcctgtcttcttaaatggcttcaggggctctgga 380
Query: 180 ttcagttggtcaggcttgcataacaaacatttttaccaactctgccgtctctttgccacc 239
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 ttcagttgatcaggcttgcataacaaacattattaccaactctgccgtctctttgccacc 440
Query: 240 atctcttaatttaagtattttctgaacaactgattttctttgtttctgttttccagagtt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctcttaatttaagtattttctgaacaactgattttctttgtttctgttttccagagtt 500
Query: 300 aagaaaattgtcatggaaggacaggcagggcatgcagagtcaccacttgggtttatttat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagaaaattgtcatggaaggacaggcagggcatgcagagtcaccacttgggtttatttat 560
Query: 360 ttgcattttaaaggtattaatcagttctacaattttgggaaaggatcagttcaatttcca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgcattttaaaggtattaatcagttctacaattttgggaaaggatcagttcaatttcca 620
Query: 420 tgatatgactgttccagcttggagg 444
|||||||||||||||||||||||||
Sbjct: 621 tgatatgactgttccagcttggagg 645
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 845
Length adjustment: 10
Effective length of query: 434
Effective length of database: 835
Effective search space: 362390
Effective search space used: 362390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
