BAC Information

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BAC

Clone NameMSMg01-348P11
Chromosome1 (Build37)
Map Location 168,841,682 - 168,841,986
singlet/doubletsinglet
Overlap genenone
Upstream genePou2f1, LOC665409, Dusp27, Gpa33, Mael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik, LOC240895
Downstream geneLOC622102, C030014K22Rik, Uck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348P11.T7 (MSMg01no348_p11.b1)MSMg01-348P11.TJ (MSMg01no348_p11.g1)
ACCAG460935AG460936
length715723
length of high quality
(start - end)
170 (65 - 234)518 (71 - 588)
definitionCHROMAT_FILE: MSMg01no348_p11.b1 PHD_FILE: MSMg01no348_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:27 2005CHROMAT_FILE: MSMg01no348_p11.g1 PHD_FILE: MSMg01no348_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTCAAAAAGAGGATCCGCGGAATTCTA
TTTTCCTTAAAAAAAAGAGTTAATACCAATATTTCTCATACTGTTTCACA
AAATAAAAACAGAAGGAACACTGCCAAACACTCATTCTACAAAGTCACAG
TCACCCTGATACCTAAACCACACAAAGACTCAACAAAGAAAGAGAACTTC
AGTCCAATTTCACTTAAAAACATTGATGCAAAAATACTCACTAACAGAAT
CCAGGAAAACATCAAAAACATCATCCATCACGACCAAGTAGTCTTAACCC
CAGGGATGCTTGGATATAGGGAAATCCATCAATGTAATCAACCATATAAC
CAAACTAAAAGGAAAAAAACACATGATCATCTCACTGGATGCAGAAAAGG
CGTTTTACAAAATCTAACACCCTTCATGCTAAAAGTCTTGGAGAAAGGAG
GTATATGAGGGGCATACCTAAACACAATATAGGCAGCATACAGCAAGCCA
ATATCTAATTATATGGAGATAAACTTAATGCACTTCCACTCACTGGGGAC
AAGATAAGGCTGTCTACTTTCCACCTATCTTTTCAATATAGTACCTGAAG
CTCTAATTGTAGCATTATGACTACTAATGGACATTGAGAATATACAAATT
AATAAGGAAGAATGCCAAGTAACTATATTCCCAGATGATTTCCTCTTATA
CACAAGTGTACCCCG
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGTTAGGAATCTGGGATAGGAGGAAATCAA
GGTCTTTGAGGAATGGAACTTCAGAAAGACATCGGGAAGAGAGAAAGGCT
AAAGAATCAGGATTGTACTGATTATGGGTCTGGAGAGATGGCTCAGCAGT
GAAGAGCACTGACTGCTCTTCCAGAAGTCCTGAGTTCAATTCCCAGCAAC
CACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGTCCTCTTCTGG
TGTCTCTGAATATAGTGGCAGTGTACTCATACACATAAAATAAATATATC
TAAAAATAAAAAAACAAAAAGATTGTACTGATTGTCTAGATTGGCTGGCC
ACCAAGCCCCCTGGATCTTCCTGTCCCTTCATTTTATCAAATTCCAAATG
TGAGCCATTAGGCCTGGCTTTTTACGTGAGTGCTGGGATCTAACTCAGGT
CCTCATGCTTGCACAACAAGCCCTCTAACCCAGTGCATTGTCTCTTCGGC
CTCATTTCTACTTAGTTTTGATGTGGCACTATGTGAAGACCAGCCTGAAT
GGAAGCGCAGTTTTATTCTGACTTCAAATATAAAGTTCATGTCCCTGCAA
GACTGTTGTGAGGGATTAGGGAACCCTGAGTTTAACCTATCTTCGTAATG
GAGACGTTTTCAGACCAGATAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_p11.g1 MSMg01no348_p11.g1 CHROMAT_FILE:
MSMg01no348_p11.g1 PHD_FILE: MSMg01no348_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:27 2005
         (518 letters)



>mm_chr1_168841682_168842599
          Length = 918

 Score =  530 bits (274), Expect = e-154
 Identities = 299/308 (97%), Gaps = 3/308 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttaggaatctgggataggaggaaatcaaggtctttgaggaatggaacttcagaaagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agttaggaatctgggataggaggaaatcaaggtctttgaggaatggaacttcagaaagac 246

                                                                       
Query: 61  atcgggaagagagaaaggctaaagaatcaggattgtactgattatgggtctggagagatg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 245 atcgggaagagagaaaggctaaagaatcaggattgtactgattatgggtctggagagaag 186

                                                                       
Query: 121 gctcagcagtgaagagcactgactgctcttccagaagtcctgagttcaattcccagcaac 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gctcagcactgaagagcactgactgctcttccagaagtcctgagttcaattcccagcaac 126

                                                                       
Query: 181 cacatggtggctcacaaccatctgtaatgggatctgatgtcctcttctggtgtctctgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 125 cacatggtggctcacaaccatctgtaatgggatctgatgtcctcttctggtgtgtctgaa 66

                                                                       
Query: 241 tatagtggcagtgtactcatacacataaaataaatatatctaaaaataaaaaaacaaaaa 300
            | |||| |||||||||||||||||||||||||||||||||||||| |||||||  ||||
Sbjct: 65  gagagtgacagtgtactcatacacataaaataaatatatctaaaaa-aaaaaaa--aaaa 9

                   
Query: 301 gattgtac 308
           ||||||||
Sbjct: 8   gattgtac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)