Query= MSMg01no349_f20.b1 MSMg01no349_f20.b1 CHROMAT_FILE:
MSMg01no349_f20.b1 PHD_FILE: MSMg01no349_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:57 2005
(610 letters)
>mm_chr1_141369455_141370466
Length = 1012
Score = 1067 bits (552), Expect = 0.0
Identities = 594/608 (97%), Gaps = 2/608 (0%)
Strand = Plus / Minus
Query: 5 gaattc-ataccactgaaccagtctgtgcgcaggccacggactgactggtgcgctggcat 63
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 gaattcaataccactgaaccagtctgtgcgcaggccacggactgactggtgcgctggcat 753
Query: 64 atagcatcgaaaggcacatagcaagggtggtaatggtggatcaaatagcatagtacacgg 123
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 752 atagcatcgaaaggcacatagcacgggtggtaatggtggatcaaatagcatagtatgcgg 693
Query: 124 ccatctgagaaagacactgtaaaattctccacctgagcacaaacatcagagaagcaatca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ccatctgagaaagacactgtaaaattctccacctgagcacaaacatcagagaagcaatca 633
Query: 184 gttagttaaaaagtcaggtttgattatagtattactatcctttgttggacagcatctctc 243
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 632 gttagttaaaaagtcaggtttgattacagtattactatcctttgttggacagcatctctc 573
Query: 244 aaaacagcgttacccttcccagaacctgagaatctgactttagttgaagaacagagacag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 572 aaaacagcgttacccttcccagaacctgagaatctgactttagttgaagaacaaaaacag 513
Query: 304 acaggtagacacacagaacactacacgatgacaaaggcagaaactgaactaaagctgctt 363
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 512 acaggtagacacacagaacactacatgatgacaaaggcagaaactgaactaaagctgctt 453
Query: 364 caagccaaaaccaaatagaacctaaaagcggggcaggggagaacggccttcagtgagact 423
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 452 caagccaaaaccaaatagaacctaaaagtggggcaggggagaacggccttcagtgagact 393
Query: 424 atggactggcaactccttgcttttagacctctggcttctacaactttgagagagtaaaac 483
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 392 atggactggcaactccttgtttttagaaatctggcttctacaactttgagagagtaaaac 333
Query: 484 tgtatgtcacgtcacctagcccacagtaatgtgtctggcagtctttggaaaactgtaaga 543
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtatgtcgcgtcacctagcccacagtaatgtgtctggcagtctttggaaaactgtaaga 273
Query: 544 attacagtcaatcgccaatactcataaatatcaaatttgg-aaaaaaaatgaaccagtct 602
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 272 attacagtcaatcgccaatactcataaatatcaaatttggaaaaaaaaatgaaccagtct 213
Query: 603 cttaatgg 610
||||||||
Sbjct: 212 cttaatgg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1012
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1002
Effective search space: 601200
Effective search space used: 601200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_f20.g1 MSMg01no349_f20.g1 CHROMAT_FILE:
MSMg01no349_f20.g1 PHD_FILE: MSMg01no349_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:57 2005
(541 letters)
>mm_chr1_141238586_141239526
Length = 941
Score = 1000 bits (517), Expect = 0.0
Identities = 532/537 (99%)
Strand = Plus / Plus
Query: 5 tagcctggctttctgcagagaatgaaattctattctggtctgggctgggtaggggttagt 64
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 205 tagcctggctttctgcagagaatgaaattctattctgggctgggctgggtaggggttagt 264
Query: 65 acaggagggaaccacatctttattcaggacgtagtccaaatggcttgcacatggtatgta 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 265 acaggagggaaccacatctttattcaggacgtagtccaaatggcttgcacatggtacgta 324
Query: 125 gtgagtagaaaactattgaataatgaatgagtgtaaaaatagctgaattctcatttaagg 184
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 325 gtgagtagaaaactattgaataatgaatgaatgtaaaaatagctgaattctcatttaagg 384
Query: 185 cttgctatgaaattcttactttgacctcttttggtaaaatgaagcagaacaaatcagcag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttgctatgaaattcttactttgacctcttttggtaaaatgaagcagaacaaatcagcag 444
Query: 245 aagaaaaccactcactttgatccacggtgtggcagaatccacatggaatacttgaactaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagaaaaccactcactttgatccacggtgtggcagaatccacatggaatacttgaactaa 504
Query: 305 gatgtagatgggttctttgaagacagtcccttccccctgaatttatgctgcatcctaaaa 364
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 505 gatgtagatgggttctttgaagacagtcccttccccctgaatttctgctgcatcctaaaa 564
Query: 365 tgctaggcagtcactctcatatatgccgttatctctatacatgttcattgtctcaaatac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgctaggcagtcactctcatatatgccgttatctctatacatgttcattgtctcaaatac 624
Query: 425 cagcctgagaccaatataatgtaatgggaagagtacagacatatggatagatggattgaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cagcctgagaccaatataatgtaatgggaagagtacagacatatggatagatggattgaa 684
Query: 485 atattggttcaaccaacgtccatctctgtgactctaaggaaactggccatcatcaca 541
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 685 atattggttcaaccaacgtccatctctgtgactctaaggaaactggtcatcatcaca 741
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|