BAC Information

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BAC

Clone NameMSMg01-349H03
Chromosome1 (Build37)
Map Location 172,350,345 - 172,552,380
singlet/doubletdoublet
Overlap geneNos1ap, LOC100040002, LOC640532
Upstream geneEG383613, Nuf2, Rgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik
Downstream geneOlfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349H03.T7 (MSMg01no349_h03.b1)MSMg01-349H03.TJ (MSMg01no349_h03.g1)
ACCAG461299AG461300
length753760
length of high quality
(start - end)		520 (42 - 561)465 (78 - 542)
definitionCHROMAT_FILE: MSMg01no349_h03.b1 PHD_FILE: MSMg01no349_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:03 2005CHROMAT_FILE: MSMg01no349_h03.g1 PHD_FILE: MSMg01no349_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(172,350,345 - 172,350,861)(172,551,936 - 172,552,380)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCAAGGACTCATGAGCAGCTAGGATGCTTACAAAGAGCTCGGTAGGGGA
GTTAAATCCATTAAAAGATTAAATTCAATTCAGAAGACAAACTACAGAAG
ACAGGGGCAGTCAAGCTTAGTAGGTAAACCAGATGGCCAAAGAGCAGAAT
TCTTACCCAGACACACCGCCATATGCCAGTATGTCTTAGTGGGCTGGACC
AGGTAGATGATGTTGTATGTCTCGTCACCGCTCCTCCAATGTACCCAACT
GCTGTTTATCTTATTCCTTCTCTAACATCTGGACCTGCTTGCTCACAAGG
AAAATAGTCACAGGCATAGTTGTTTGGTTCCCCAACACTACCACACTGCA
GCTTGTCTCATGTGTGCAATAAGCTTGCAATACTACAGAAATCATTTTTC
CAAAGAATTCACTTGACCCTGCTTGTTCCAGTCCACTGAACGCAGTGCTC
ACCTTGGCTGGCTGTGATGCTGTCTCCCCGCCCTCCCCAAACCCCCACCA
TGAGCATCTTACACACAGCAATGTAAATTTTGGGAGAAAGAACATTACAG
AGAATATGGGTTATGGGACCCCGTAACAGCTTCCTTACCTGCCCCCCACA
GGAGTAACTCTTCCTTTAGCAAGCAATCTTCCTCTTGAACCCTCTCCCCC
CCACAATTCTCTAGTGCCTTTACACGTCCCCGGGGTAATTAACCCGCCGT
ATA

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTGTGGTTGAAGGTGATCAT
GAACTTCCAATCTACCTCCCAACTGCTAAACTAACAGGCATGAAACCCTT
CTTGCTTTAAGGTTGAAAGATCCAAATTGCTGCTCATGGTGTCTCACACT
TGTAATCCCAGCATTCAGGAGGTTGAGGCAGCAGGATTGCTATGAGCTTG
AGCTTAGCCTGGGCTACATAGTGAGACTCTACGACAAAAAAATAAAATCA
TAAGAGCTGAAAGAAAAGGAAATTTTGCTGGCATTTGATTTCACCAGAAT
TTTTAATCTTAGTATTTTCATTCTGAAAATATCCCAAAGGTCATGTGTAA
GATATTCTGAAGTGTGTAAGGCTTCTGTGGTTTTAGGGTTCACACTCACA
TTAGCACTTACAATTGTGAGAGTCCTGGTGATAAGCTAAATGATAGTGCT
TGATTCTATGTTATCTTTTGCAATAGTGCTTTATCTGGGGATCCAGCCTA
GGGGTTTGTAAGTGTTAGGCAAGCACTCTACTCACTGAAATATGTACAGG
AATTTAATCCAGCAACATGGCTCCTCTGGCAAGGAATTGCTCCCCAATAC
TTTCTAAGCCTGGATGACCCAATCATAATCTTTTTTCTCCTTTAAATCTC
CCTGGCCCTTAATAACCCCCTTTAATTCCCCAAAGTGTATCGTAACGCTA
TCTCTTTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_h03.b1 MSMg01no349_h03.b1 CHROMAT_FILE:
MSMg01no349_h03.b1 PHD_FILE: MSMg01no349_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:03 2005
         (520 letters)



>mm_chr1_172350142_172351061
          Length = 920

 Score =  992 bits (513), Expect = 0.0
 Identities = 516/517 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcaaggactcatgagcagctaggatgcttacaaagagctcggtaggggagtta 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcaaggactcatgagcagctaggatgcttacaaagagctcggtaggggagtta 263

                                                                       
Query: 64  aatccattaaaagattaaattcaattcagaagacaaactacagaagacaggggcagtcaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aatccattaaaagattaaattcaattcagaagacaaactacagaagacaggggcagtcaa 323

                                                                       
Query: 124 gcttagtaggtaaaccagatggccaaagagcagaattcttacccagacacaccgccatat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcttagtaggtaaaccagatggccaaagagcagaattcttacccagacacaccgccatat 383

                                                                       
Query: 184 gccagtatgtcttagtgggctggaccaggtagatgatgttgtatgtctcgtcaccgctcc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gccagtatgtcttagtgggctggaccaggtagatgatgttgtatgtctcgtcaccgctcc 443

                                                                       
Query: 244 tccaatgtacccaactgctgtttatcttattccttctctaacatctggacctgcttgctc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tccaatgtacccaactgctgtttatcttattccttctctaacatctggacctgcttgctc 503

                                                                       
Query: 304 acaaggaaaatagtcacaggcatagttgtttggttccccaacactaccacactgcagctt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acaaggaaaatagtcacaggcatagttgtttggttccccaacactaccacactgcagctt 563

                                                                       
Query: 364 gtctcatgtgtgcaataagcttgcaatactacagaaatcatttttccaaagaattcactt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtctcatgtgtgcaataagcttgcaatactacagaaatcatttttccaaagaattcactt 623

                                                                       
Query: 424 gaccctgcttgttccagtccactgaacgcagtgctcaccttggctggctgtgatgctgtc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaccctgcttgttccagtccactgaacgcagtgctcaccttggctggctgtgatgctgtc 683

                                                
Query: 484 tccccgccctccccaaacccccaccatgagcatctta 520
           |||||||||||||||| ||||||||||||||||||||
Sbjct: 684 tccccgccctccccaaccccccaccatgagcatctta 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no349_h03.g1 MSMg01no349_h03.g1 CHROMAT_FILE:
MSMg01no349_h03.g1 PHD_FILE: MSMg01no349_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:03 2005
         (465 letters)



>mm_chr1_172551516_172552380
          Length = 865

 Score =  853 bits (441), Expect = 0.0
 Identities = 444/445 (99%)
 Strand = Plus / Minus

                                                                       
Query: 21  catgaacttccaatctacctcccaactgctaaactaacaggcatgaaacccttcttgctt 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 catgaacttccaatctacctcccaactgctaaactaacaggcatgaaacccttcttgctt 806

                                                                       
Query: 81  taaggttgaaagatccaaattgctgctcatggtgtctcacacttgtaatcccagcattca 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 taaggttgaaagatccaaattgctgctcatggtgtctcacacttgtaatcccagcattca 746

                                                                       
Query: 141 ggaggttgaggcagcaggattgctatgagcttgagcttagcctgggctacatagtgagac 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ggaggttgaggcagcaggattgctatgagcttgagcttagcctgggctacatagtgagac 686

                                                                       
Query: 201 tctacgacaaaaaaataaaatcataagagctgaaagaaaaggaaattttgctggcatttg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tctacgacaaaaaaataaaatcataagagctgaaagaaaaggaaattttgctggcatttg 626

                                                                       
Query: 261 atttcaccagaatttttaatcttagtattttcattctgaaaatatcccaaaggtcatgtg 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atttcaccagaatttttaatcttagtattttcattctgaaaatatcccaaaggtcatgtg 566

                                                                       
Query: 321 taagatattctgaagtgtgtaaggcttctgtggttttagggttcacactcacattagcac 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taagatattctgaagtgtgtaaggcttctgtggttttagggttcacactcacattagcac 506

                                                                       
Query: 381 ttacaattgtgagagtcctggtgataagctaaatgatagtgcttgattctatgttatctt 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttacaattgtgagagtcctggtgataagctaaatgatagtgcttgattctatgttatctt 446

                                    
Query: 441 ttgcaatagtgctttatctggggat 465
           ||| |||||||||||||||||||||
Sbjct: 445 ttgtaatagtgctttatctggggat 421


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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