BAC Information

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BAC

Clone NameMSMg01-349H12
Chromosome1 (Build37)
Map Location 79,115,388 - 79,288,754
singlet/doubletdoublet
Overlap genenone
Upstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260, EG545332
Downstream geneScg2, Ap1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349H12.T7 (MSMg01no349_h12.b1)MSMg01-349H12.TJ (MSMg01no349_h12.g1)
ACCAG461316AG461317
length743766
length of high quality
(start - end)		629 (37 - 665)567 (76 - 642)
definitionCHROMAT_FILE: MSMg01no349_h12.b1 PHD_FILE: MSMg01no349_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:05 2005CHROMAT_FILE: MSMg01no349_h12.g1 PHD_FILE: MSMg01no349_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,115,388 - 79,116,013)(79,288,188 - 79,288,754)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTGA
GTCATCATCATCCTTACGTGATTAACATAAAGAATCACCAAATTACTTGA
CACAGTGACTGTGACATTTAGCATTGCCATTTAACAAGCTTTAATAAACT
CAATATCATAATTAATGAAAACTACGACTACACCTACTCTTATGACACGT
GTGTGTCTAAGACATTCCTAAATGTGTAAATCCTTCACATGTGGGTGTTC
CAGGGGCTAGAATGGAGCTGTCAGGTGTGAAGTAAACGTTACAACAAATT
TCTCTTTATTCATTTTTTAAAGAATCCTTCAAAATTGGCCAGAACTTGAC
TGTGTTTTTCTATTATTTAAGTCCTTAATGCCTGGTGGGATTTGTATTGT
TTAAGTCCTAAATGCCTATTAAGATTTCTTAGCCATTAGAAACTTATGGA
TATGAACCTATTATATAGATATAGACATGCTAGTCCTGGAAAAGTATCAA
TGTAGTCTATCCAGTCTACTTCTTTTCAGGCTACCTTAAGATAGTTATTA
TAACTCAGGGTCCAAGATTCAAATGTTCAAATCATTCCCACTTTTCTAAT
TTTCTTCATGTCCTAACATACTGCAAATCAGTAGATTCTAAGATAGAGAT
CATGTGACTTTGAGAACTCANAGTGCAGATCTATAATCAAGACATGAGTG
ACTTTATCAAGATTTACTATTTCTTTGAGACCAAGAATAGCTC

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCATTCCTAAAACTGGAGGCTAATA
AATGTGCATTGTTTTAAAATGTAAATTTTATGATTAGCCCTTATGGCAGC
TATTTAAAGCTCATGCATCCTTTCTTAGCTTATAAGCAGGACAAATACCC
AATCTTAAAGCTATGCACTTCCCTATAGATGGGGTGCTGTCAAGGATAGG
GATTTCAACAAGAATTTTCTCTTCTTCTACCCCTTTATTCTAAGACATCT
CCTTTTGTAATCTCTTCGAGTGGGTAGGGAAAGAAAAGGTTAGACTGAGA
TAATGGCTAGACTACCAGAGTCCATCTCATTGCATCTTGGTATGTCCTGG
AGAGTATGCTTGGTCCTCATTATTTGAAACTCTTCTTAGAATGCAGAGTT
ACTTGCAGATTCTCAAGGTTCATATTGACACTGTGTCTGCTCACATGAAA
ACAGGATGGGCTCAATAGCATGCTATGATGTGCATAATGAAGTGGTAGGG
TCCATGATGAAGCCCCTTACTCTATATTACATATGAGAGCTAGAGTTCCA
GGCACAGGTTTTAAGCAGCCCTTTATTGCTATTGATCATCAATTGTTTGC
ATTTTTAGTGAATATTAATAAATAGTTTTGAAAGTCTAATACTACAATGA
TATGCTATTTTAAGAGATGTAAGTTTGGTATTTCCCAACCAAGAACATTC
CCCCTTCCTCCCCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_h12.b1 MSMg01no349_h12.b1 CHROMAT_FILE:
MSMg01no349_h12.b1 PHD_FILE: MSMg01no349_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:05 2005
         (629 letters)



>mm_chr1_79115185_79116213
          Length = 1029

 Score = 1110 bits (574), Expect = 0.0
 Identities = 613/626 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttgagtcatcatcatccttacgtgattaacataaagaatcaccaaattacttg 63
           ||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 204 ggaattcttgattcatcatcatccttacatgattaacataaagaaccaccaaattacttg 263

                                                                       
Query: 64  acacagtgactgtgacatttagcattgccatttaacaagctttaataaactcaatatcat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acacagtgactgtgacatttagcattgccatttaacaagctttaataaactcaatatcat 323

                                                                       
Query: 124 aattaatgaaaactacgactacacctactcttatgacacgtgtgtgtctaagacattcct 183
           ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 324 aattaatgaaaactaagactacacctactcttatgacacatgtgtgtctaagacattcct 383

                                                                       
Query: 184 aaatgtgtaaatccttcacatgtgggtgttccaggggctagaatggagctgtcaggtgtg 243
           |||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 384 aaatctgtaaatccttcacaggtgggtgttccaggggctagaatggagctgttaggtgtg 443

                                                                       
Query: 244 aagtaaacgttacaacaaatttctctttattcattttttaaagaatccttcaaaattggc 303
           |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 444 aagtaaacattacaacaaatttctctttattcattttttaaagaatccttcaagattggc 503

                                                                       
Query: 304 cagaacttgactgtgtttttctattatttaagtccttaatgcctggtgggatttgtattg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 504 cagaacttgactgtgtttttctattatttaagtccttaatgcctggtgggatttgtatta 563

                                                                       
Query: 364 tttaagtcctaaatgcctattaagatttcttagccattagaaacttatggatatgaacct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tttaagtcctaaatgcctattaagatttcttagccattagaaacttatggatatgaacct 623

                                                                       
Query: 424 attatatagatatagacatgctagtcctggaaaagtatcaatgtagtctatccagtctac 483
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 624 attatatagatatagacatgctagtcctggaaaagtatcaatgtagactatccagtctac 683

                                                                       
Query: 484 ttcttttcaggctaccttaagatagttattataactcagggtccaagattcaaatgttca 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttcttttcaggctaccttaagatagttattataactcagggtccaagattcaaatgttca 743

                                                                       
Query: 544 aatcattcccacttttctaattttcttcatgtcctaacatactgcaaatcagtagattct 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aatcattcccacttttctaattttcttcatgtcctaacatactgcaaatcagtagattct 803

                                     
Query: 604 aagatagagatcatgtgactttgaga 629
           || |||||||||||||||||||||||
Sbjct: 804 aaaatagagatcatgtgactttgaga 829


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no349_h12.g1 MSMg01no349_h12.g1 CHROMAT_FILE:
MSMg01no349_h12.g1 PHD_FILE: MSMg01no349_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:05 2005
         (567 letters)



>mm_chr1_79287988_79288954
          Length = 967

 Score = 1073 bits (555), Expect = 0.0
 Identities = 564/567 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcattcctaaaactggaggctaataaatgtgcattgttttaaaatgtaaattttatgatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 tcattcctaaaactggaggctaataaatgtgcattgttttaaaatgtaaattttatgatt 708

                                                                       
Query: 61  agcccttatggcagctatttaaagctcatgcatcctttcttagcttataagcaggacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 agcccttatggcagctatttaaagctcatgcatcctttcttagcttataagcaggacaaa 648

                                                                       
Query: 121 tacccaatcttaaagctatgcacttccctatagatggggtgctgtcaaggatagggattt 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 647 tacccaatcttaaagctatgcacttccctctagatggggtgctgtcaaggatagggattt 588

                                                                       
Query: 181 caacaagaattttctcttcttctacccctttattctaagacatctccttttgtaatctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 caacaagaattttctcttcttctacccctttattctaagacatctccttttgtaatctct 528

                                                                       
Query: 241 tcgagtgggtagggaaagaaaaggttagactgagataatggctagactaccagagtccat 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tcgagggggtagggaaagaaaaggttagactgagataatggctagactaccagagtccat 468

                                                                       
Query: 301 ctcattgcatcttggtatgtcctggagagtatgcttggtcctcattatttgaaactcttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ctcattgcatcttggtatgtcctggagagtatgcttggtcctcattatttgaaactcttc 408

                                                                       
Query: 361 ttagaatgcagagttacttgcagattctcaaggttcatattgacactgtgtctgctcaca 420
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ttagaatgcagagttactcgcagattctcaaggttcatattgacactgtgtctgctcaca 348

                                                                       
Query: 421 tgaaaacaggatgggctcaatagcatgctatgatgtgcataatgaagtggtagggtccat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tgaaaacaggatgggctcaatagcatgctatgatgtgcataatgaagtggtagggtccat 288

                                                                       
Query: 481 gatgaagccccttactctatattacatatgagagctagagttccaggcacaggttttaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gatgaagccccttactctatattacatatgagagctagagttccaggcacaggttttaag 228

                                      
Query: 541 cagccctttattgctattgatcatcaa 567
           |||||||||||||||||||||||||||
Sbjct: 227 cagccctttattgctattgatcatcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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