Query= MSMg01no349_l05.b1 MSMg01no349_l05.b1 CHROMAT_FILE:
MSMg01no349_l05.b1 PHD_FILE: MSMg01no349_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:23 2005
(491 letters)
>mm_chr1_82145053_82145943
Length = 891
Score = 791 bits (409), Expect = 0.0
Identities = 449/487 (92%), Gaps = 38/487 (7%)
Strand = Plus / Plus
Query: 5 gaattctttttctgactttacccttaggattctaggcaagtgccaacctgtaatgaggtt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttttctgactttacccttaggattctaggcaagtgccaacctgtaatgaggtt 264
Query: 65 gtactttgactctaagaaattagccggatggccccatctgcttcatacacacacacacac 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtactttgactctaagaaattagccggatggccccatctgcttcatacacaca------- 317
Query: 125 acacacacacacacacacacacacacacacgcacacacacacacaccaacagtatactct 184
|||||||||||||||||||||||||||||
Sbjct: 318 -------------------------------cacacacacacacaccaacagtatactct 346
Query: 185 gtaagcaaataggattaggaagaaagggacatgcattaattaacttttttgctattgtga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gtaagcaaataggattaggaagaaagggacatgcattaattaacttttttgctattgtga 406
Query: 245 caaaatacccagatttaaaaaacaaaaacaacaccttaaggaatgaaggatttattttgg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 caaaatacccagatttaaaaaacaaaaacaacaccttaaggaatgaaggatttattttgg 466
Query: 305 ctcacagagagtacagtttatcatattgggaagagactggtgtcaagactttaaggttgt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ctcacagagagtacagtttatcatattgggaagagactggtgtcaagactttaaggttgt 526
Query: 365 tctccacattacaccaagaccttaaagtcactctccacattgcatccatagttgagaacc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tctccacattacaccaagaccttaaagtcactctccacattgcatccatagttgagaacc 586
Query: 425 gagagccataatgctagcacacagctaacttgatcctttccatatagtaccaaacacatt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 gagagccataatgctagcacacagctaacttgatcctttccatatagtaccaaacacatt 646
Query: 485 tagaata 491
|||||||
Sbjct: 647 tagaata 653
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_l05.g1 MSMg01no349_l05.g1 CHROMAT_FILE:
MSMg01no349_l05.g1 PHD_FILE: MSMg01no349_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:23 2005
(467 letters)
>mm_chr1_82294882_82295750
Length = 869
Score = 847 bits (438), Expect = 0.0
Identities = 461/469 (98%), Gaps = 2/469 (0%)
Strand = Plus / Minus
Query: 1 agtggagaaattatggtttatttggagacaagggtgtcctggagcacactatgtaggcca 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 796 agtggagaaattatggtttatttggagacaagggtgtcctggaacacactatgtaggcca 737
Query: 61 gagagggccttgacctcctgtgtgatcttcttgccacttgctgaggttgcaggtgtctgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 gagagggccttgacctcctgtgtgatcttcttgccacttgctgaggttgcaggtgtctgt 677
Query: 121 caccaccgtctccagctctcataggagaagtcagaaagcattgaccagacatctaaagaa 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 caccacagtctccagctctcataggagaagtcagaaagcattgaccagacatctaaagaa 617
Query: 181 atcattccctccaaacttcaggaagttggaaatccatcatttctctctctatcacttcac 240
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 616 atcattccctccaaacttcaggaagttggaaatccttcgtttctctctctatcacttcac 557
Query: 241 tttaggggacacttctagaataatcctatctcccacccacagtacttaggtatttggtgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tttaggggacacttctagaataatcctatctcccacccacagtacttaggtatttggtgg 497
Query: 301 gg-cccccttgatgctgtccacggtcctgaacaccttgggttccttctcagagtccttta 359
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ggccccccttgatgctgtccatggtcctgaacaccttgggttccttctcagagtccttta 437
Query: 360 atgagaagtaaaagaaacaaaataaaaggcagaaagtggagaggttgttgagagaaaaag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 atgagaagtaaaagaaacaaaataaaaggcagaaagtggagaggttgttgagagaaaaag 377
Query: 420 ggtttcttttttattttgttttttggng-ttttgtttgtttgcttgaaa 467
|||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 376 ggtttcttttttattttgttttttggtgtttttgtttgtttgcttgaaa 328
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 869
Length adjustment: 10
Effective length of query: 457
Effective length of database: 859
Effective search space: 392563
Effective search space used: 392563
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
