BAC Information

Click to search

BAC

Clone NameMSMg01-349N10
Chromosome1 (Build37)
Map Location 58,125,640 - 58,126,082
singlet/doubletsinglet
Overlap geneAox1
Upstream geneLOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339, 2810022L02Rik, Kctd18, Sgol2
Downstream geneAox3, Aox4, Aox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349N10.T7 (MSMg01no349_n10.b1)MSMg01-349N10.TJ (MSMg01no349_n10.g1)
ACCAG461598AG461599
length731755
length of high quality
(start - end)		608 (41 - 648)534 (77 - 610)
definitionCHROMAT_FILE: MSMg01no349_n10.b1 PHD_FILE: MSMg01no349_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:34 2005CHROMAT_FILE: MSMg01no349_n10.g1 PHD_FILE: MSMg01no349_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TACTAATCTTATAGAGCAGTTCCAAGTCACAGTGAATTTTGTCAGTCAAT
GGGCTGGTGATGGGCTGGTTACTTTCTATCCTTACCTAGATCAGGGGCTA
GGTGTCTAAGCAGAAGCAGCAAGCCTGGCTGGTTTCTGTTTGGGAATGAT
TAACCTCATCCCCAGGAGCCCTTCCTGGGTCTGATTCCTCAGGTTTTCCT
GTTTGACAGAAGCCAGAATCTTTCTTATAAAAATTTTCAGATTCTTTTTT
CAATTTTATGGGCATTGGATTACATTTTTCCTATTGTGCATTTCTTGGGA
GAAAACTTTTTTTTTTAAATATTCATCCATATGTTTTCAGGAAGCCTCTA
TTTTACAGTTCCAGTTTTTGCACTGGAAACTCCCTTGTTCTGACAACTAG
GAATCTCGGCTGCAGGTTATACACTGAATTTTAAATTCTGTATTCCTGTC
TCAAAGCATAAACTCCCATGTCTTTCCTTTTTTCAGTACAACACTTAGAG
TGGGCATTCGTGAACAAAGGGCAAGATGAATATGGGTTGCTGAACTGTGG
TGACTCTGGCTAATGCATTCCTGTATCAGTCTTCTTCCATTCCCAGGCCT
GAGGCCCATGGTGGTTGAACCATGTACCTGTATTCTTACCTAACATAAGA
CTTGGGAGGAGGAAAAGGGTCATAGGATTGG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAACTTGAGCTCGGGACGTGTTG
GGACTGGGGTAAGCCAGAGATGCTTGGGTCCGCAAATTTATATATCAAAT
TTATAATTCTCTGCCCATGTCATCTTTCACGTTTCTTGGTGGCATAATGT
TACAACTTTAATAAGACATCAAAGTAGCAATCTGTTTTAAAGACAGCATC
TCGTGTATCCCAAGCTAGCCTCAGACTCATTGTGTAGCTGAGGATGGCGC
TGAAGTGTTGATCCTTTTCTCTCTGCCTCCCAAGTGCTGGATTTATAGGC
ATACACAACCATGTCCAGTGTATGTAGTTCTGAGAATGGATGCTGGAGCT
TCATGCATACGAGGCAAGCATTCCAATAACTGAGTCCCAACCTCCAGCCC
TGAAAACAGCTTATCCCCACGAAAATAAGAAGAGCTGGGGACACTATCCC
CATGAAAATACGAAGAGCTGGTAACTGGAAAAATTGCTCAGACAGCAAGA
AGGCAGTACCTCATCTGTGGCCAGAAATGTCTCTCTGCCGAAGGTGTTTG
CTTCCTGAAGATGATCTGCAGTAATGATGTCCACCACACCAGGCAGGCTG
AGAGCTTCCGACAGATCAATGGACCTACCAAAGCATATCAGATGGCTTCA
CAGAGCAGTCACACAACCCATAGAACCAAGAATGTGGCAGTTGGAAACTA
ACGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_n10.g1 MSMg01no349_n10.g1 CHROMAT_FILE:
MSMg01no349_n10.g1 PHD_FILE: MSMg01no349_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:34 2005
         (534 letters)



>mm_chr1_58125148_58126082
          Length = 935

 Score =  795 bits (411), Expect = 0.0
 Identities = 435/443 (98%), Gaps = 1/443 (0%)
 Strand = Plus / Minus

                                                                       
Query: 93  gtcatctttcacgtttcttggtggcataatgttacaactttaataagacatcaaagtagc 152
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 gtcatctttcacgtttcttggtggcataatgttacaactttaataagacatcaaagtagc 876

                                                                       
Query: 153 aatctgttttaaagacagcatctcgtgtatcccaagctagcctcagactcattgtgtagc 212
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 aatctgttttaaagacagcatctcgtgtatcccaagctagcctcagactcattgtgtagc 816

                                                                       
Query: 213 tgaggatggcgctgaagtgttgatccttttctctctgcctcccaagtgctggatttatag 272
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 tgaggatggcgctgaagtgttgatccttttctctctgcctcccaagtgctggatttatag 756

                                                                       
Query: 273 gcatacacaaccatgtccagtgtatgtagttctgagaatggatgctggagcttcatgcat 332
           |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 755 gcatacacaaccatgtccagtgtatgtagttctgaggatggatgctggggcttcatgcat 696

                                                                       
Query: 333 acgaggcaagcattccaataactgagtcccaacctcc-agccctgaaaacagcttatccc 391
           ||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct: 695 acgaggcaagcattccaataactgagtcccacccccccagccctgaaaacagcttatccc 636

                                                                       
Query: 392 cacgaaaataagaagagctggggacactatccccatgaaaatacgaagagctggtaactg 451
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 635 cacgaaaataagaagagctggggacactatccccatgaaaatactaagagctggtaactg 576

                                                                       
Query: 452 gaaaaattgctcagacagcaagaaggcagtacctcatctgtggccagaaatgtctctctg 511
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 575 gaaaaatcgctcagacagcaagaaggcagtacctcatctgtggccagaaatgtctctgtg 516

                                  
Query: 512 ccgaaggtgtttgcttcctgaag 534
           |||||||||||||||||||||||
Sbjct: 515 ccgaaggtgtttgcttcctgaag 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 935
Length adjustment: 10
Effective length of query: 524
Effective length of database: 925
Effective search space:   484700
Effective search space used:   484700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |