BAC Information

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BAC

Clone NameMSMg01-350I15
Chromosome1 (Build37)
Map Location 41,243,257 - 41,243,496
singlet/doubletsinglet
Overlap genenone
Upstream geneIl1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1
Downstream geneLOC100041441, LOC383634, LOC666582
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350I15.T7 (MSMg01no350_i15.b1)MSMg01-350I15.TJ (MSMg01no350_i15.g1)
ACCAG462127AG462128
length1,883766
length of high quality
(start - end)
---241 (82 - 322)
definitionCHROMAT_FILE: MSMg01no350_i15.b1 PHD_FILE: MSMg01no350_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:30 2005CHROMAT_FILE: MSMg01no350_i15.g1 PHD_FILE: MSMg01no350_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCTCCCCCTCACTCTTTCTTATAGTTGACCCCGCGTGCTGGTGGTNTTA
TCTCACATNCAGGAGGTGCGAGNGGGGGNAGTATTTTCTCTCTTATGACA
ACACAATAGTATCGGCACGGTAGCGGNTTATACTGATTTAAACGTATATA
CCTCGCCCACACTCACATACCACACACGTATGCGTTATTGAACAAAGTCA
CGANTCACCACGCAGCACAGACCACGCGATCACACTAGCCGCACGCGCCG
NCCGACTTGTGGTAACGCGCTGCCACGTCTACGGCNATCACACGCTGCGG
TTCAGACATATTANGACTACTGAGCTAAAACTACAAGAGATAGCGTCGTG
GGCAGGATACGCGAGCTCGTACTTATTCCTACTTGTCANCGGGTACATAC
ATAGCACGAGCTGTATAGAGATATGCCTGTACCGGGATAAGCCGCNCATG
TCATGATAGACCAGCCAGACAGTGCACCACGCTCGCTGTCTGTTCTCTCG
GTGAGACTGCTACTAGAGATGAGTGGTACATATTAGAATGTACGAGCACA
CACCACTCTACAGCGCGTGCTCANCTAGCNCGCGCGCACTATCCTACTGG
CGTACGACTATCGCTTGATGTCGCGGCTGTCGCGCGCGGGCGNGCCCACC
TACGCGACATACGAGTTTGCGGCCTGCGCAGACTACGAAAGCACTATCGT
TATANCGACCATCAGTGGCATACGTCACTATGATACCACACCANAACTAT
TCTACCTCGACACCACATCACGTGAAGAGATAAATAAGAGATAGAGGTGT
AATATGCGATATGCGNATTATGATTCACGCATAGATATATAGCGAACACG
AATGATAGCTATTCGCTGTCAATGCGNGAAGCGAGTCACACGGGTGCTCT
AANCACCGAGTCTATAGAGCACACGCTCCGTAGTAGCATGAGTCTTNATA
TGCTTTGCACTATCACCTATATGNTCACACGTACTGTAGCATATCCGCTA
GCCTATACATCACGTAGGAGTGATACGCGCGTGTGNCACGCTCGTGTGGA
CGTATATGTGCGCACAGATCATGTGCGCGTCCGCGCACAGCACAGACGCT
CTCATACCTCGCGAGTCGTACATGTACACATATAGACGANAGTNCGTCTG
AGAGTGTAGCNCGATTCGTAGCATTGCGGCCTGCGCGCGCGACCGCGAGA
CGCATAGTATCGATCGACCGGCGTGTGCTCGTTTNNATGTGCAGACCTGA
CANCACTTCATATAGTGTCCTCATACAGCCACTATCACAGTACATGAGAC
GCCTACCACTCATCGTGAGTGTCNTTTNGCCGAGATAATAATGCGCGCGC
TATAGATCTCGCTGGCGGCGCGCANATGATCCTCACGTGTTTCCTANGTA
TCCACATTGTAGTNCGCGGACGACGCACCATACTGATCTCCATATGACTA
TATAGTCTCTACTCGACTGTAGACCACGTCCTCACTAGTGACACACACGC
GCGACANAGAATATCACGACATACTCGCGTCGCTGCTCACGCACATGTAC
ACTGATACCATTAACACTTCAATCCGATATCTGATACTACTACTCCTCTC
TCTGTATGTGGCCGTCCCGTGTTATGACTTGACGATGCTCACGCTGCTCT
TGCGCACCATTTGTGCCCATCATATATATCGATCGTTATACGCTCGCTGA
AGTGTGTGCCGCCCGCTGTGTATTGTATCCCCTCGCACGCCGAGTATGCC
ACTCTCCATCTCTACATATCCCTCCCCCTTACCCATTATATATCGCCACC
TGCAGCGAGCATCCATGCGCGCACTTACCGCGACTATGGTTATGTCAGTG
GATTAGACGTCTCGCTATTACACGTCCGTCAGC
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGAAAGTCATCCACACA
TTACTAAACATTCCATGTGGCAGTCTATTCATTCCATACAGCCCTGAGCA
CCCATGAGTTCGGCACCCAGCTGTGCATTCAATTCAACCACAGGCCAAAA
GTACCGATTTTAAAAACTGGACTGGACCTATTTCTAACACATACAGATTT
TTGTTGTCGTCATTCCATAAAATGACACATGACGTATCTATTTACCTAGT
ACTTATATGAGCTGTGATAAGCATTTTTTAAATTAAAGTATATTGAAAGA
CAAGCATAGATTTTAAGTAAATGTAATAGAGCTTTATATCATGAGTTTGA
ACATTCTTGGATTGGGTTATGCGCAGGGAGTCCTGGGTCCAACCCCTGGG
GAAAAGAGAGAGATGACTATCCAGTGTCCTGTTTACTAAAATTCGGGAAA
ACACAGGATTAACTCCAGGTCACTCTAGCTTTTAAGGATTTCCTTTAACT
AGAAAGGAAATTCCATTTGATAAGCCTCTAGTATCTATTAGTATCTATCT
TGGTATCCTAATTCTAAATTTTTTCCCCTATTGCTCCCTGAATTATAAAA
ATTACCGGCCTTTTCATTTTCCAAAACTGCATGCCCTATTTCTTGGTACT
AGGACACCGTTATTCATATCTTTCACAATATTAATTATCACTCACCTTCA
CTTCCGGAAAATGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_i15.g1 MSMg01no350_i15.g1 CHROMAT_FILE:
MSMg01no350_i15.g1 PHD_FILE: MSMg01no350_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:30 2005
         (241 letters)



>mm_chr1_41243057_41243696
          Length = 640

 Score =  412 bits (213), Expect = e-119
 Identities = 234/241 (97%), Gaps = 1/241 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagaaagtcatccacacattactaaacattccatgtggcagtctattcattccatacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atagaaagtcatccacacattactaaacattccatgtggcagtctattcattccatacag 381

                                                                       
Query: 61  ccctgagcacccatgagttcggcacccagctgtgcattcaattcaaccacaggccaaaag 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccctgagtacccatgagttcggcacccagctgtgcattcaattcaaccacaggccaaaag 321

                                                                       
Query: 121 taccgattttaaaaactggactggacctatttctaacacatacagatttttgttgtcgtc 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 320 tacagattttaaaaactggactggacctatttctaacacatacagatttttgttgtcatc 261

                                                                       
Query: 181 attccataaaatgacacatgacgtatctatttacctagtacttatatgagctgtgataag 240
           |||||||||| |||||||||||| | ||||||||||||||||||||| ||||||||||||
Sbjct: 260 attccataaa-tgacacatgacgaacctatttacctagtacttatataagctgtgataag 202

            
Query: 241 c 241
           |
Sbjct: 201 c 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 640
Length adjustment: 9
Effective length of query: 232
Effective length of database: 631
Effective search space:   146392
Effective search space used:   146392
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)