BAC Information

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BAC

Clone NameMSMg01-350K01
Chromosome1 (Build37)
Map Location 89,468,815 - 89,469,260
singlet/doubletsinglet
Overlap genenone
Upstream genePde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454
Downstream geneNeu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350K01.T7 (MSMg01no350_k01.b1)MSMg01-350K01.TJ (MSMg01no350_k01.g1)
ACCAG462194AG462195
length748767
length of high quality
(start - end)
248 (81 - 328)446 (85 - 530)
definitionCHROMAT_FILE: MSMg01no350_k01.b1 PHD_FILE: MSMg01no350_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:37 2005CHROMAT_FILE: MSMg01no350_k01.g1 PHD_FILE: MSMg01no350_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTGGATTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCAGTGCATTACAGGATCATGAGCAAAGGACTCAGTG
GTTTGTTGTTGTTTTAGATTTGTTTATTTATTTTTATGTATATGAGTACA
CTGTAGCTGTCTTCAAACACAACAGAAGAGGGCATCAGATCCCATTACAG
ATGGTTGTGAGCCACCATGTGATGTGATTGCTGGGAATTGAACTCAGTGC
TCTTAATCTCTGATCCATTTCTCCAGTCCAGGACTCAGTGTTTTAAGAAC
TGGGATTTAGGGCATTTGCTATGCAGCGATTTTTTTTTGGTACACCCGAT
TATGAACCAGTTGGAAGAAAACCCAGGGCCCCCTTTCTTGCATTCTAGAT
ATGAATTCTTTTTTCTTTCCCCAACTTCTTGGCTTCCTCTATGGCCAATT
CCTTAAACCCTTCTACTGCGTCCTCTGGCTCTCATAAGAACATTAGCCCA
CTATATACATCTTCAGCCTTCCTGCGGAAGATCGCCTAGCCTTCACCTAC
AACGCTAGCTCTTCCCTCTTTGCCCCCATATATGCCCGCACATGTTCTTG
CATCTTTTCCCCCCTTCCCCCCTATATTTTTCTTCTCCTTTTACTTTTCT
CTTTCCTTTCCCCCCTTATAACTCCCTTTTGCTTTCTCATCCCCTCTTTT
GCCTTACCCCCCCACCGCCCCTTTTTTCTTTTTTCCCTTCTCTCTCCC
NNNNNNCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTACAGAGGCTTCTG
CTTCCCCCAGGAACTTCCTGTTCTAGTCATTAAGATCCCAACCCCTCATC
CCTAGGAACTTGAAACACTTAGCTAGAGTGAGAGCGGGAACAAGTGCTCA
CAGTCAACCCATCAGCTATTTCACCAACAGAAGCTCACCATGGGACATTC
TTTAAAAGACCTCTCATTAATGTTCAAACTCACTGTGGTATCCCTGGCAG
TGGGGCCACAGGGACTGCTGCTACCGTTAGGAAACAGGACAGGCTGGGTG
TCTCCCTATCCTGGGGACCATGTCCATGAAAATCTGTGGTTGTTCAAAGA
GTGGCCTGAGAGTATGGTTGAGGAAGATGGCCTATTGTCCATTTTCATTG
TCCAGGATGCTGGAGTCTCCAAGGAGACTCTGGCTTCTCCTTTCTGAGAC
TAAGTAACATCAAATGTGGGCCAAGATGAATAAAGGGGGAGGGGAAAGGA
AAACACAGTGGGGGGGACCCTACCAGAGCCCTTAATGCCTCTTCTGCATT
TATACAGCCCATTTTCCCCCAAGGTAATCCAGATATTGGGTCACTACCTT
GATATCACCAGATCTATCCTTACATTACTGTGCATTCTTCATTTCTTGTT
TCCTTGTCTCTTTAATGCGTCTCTTGGAATATCCCTAGATCTTGGTGCCT
AGCCCGGCCGTTCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_k01.g1 MSMg01no350_k01.g1 CHROMAT_FILE:
MSMg01no350_k01.g1 PHD_FILE: MSMg01no350_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:37 2005
         (446 letters)



>mm_chr1_89468615_89469460
          Length = 846

 Score =  855 bits (442), Expect = 0.0
 Identities = 445/446 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttacagaggcttctgcttcccccaggaacttcctgttctagtcattaagatcccaaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttacagaggcttctgcttcccccaggaacttcctgttctagtcattaagatcccaaccc 260

                                                                       
Query: 61  ctcatccctaggaacttgaaacacttagctagagtgagagcgggaacaagtgctcacagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcatccctaggaacttgaaacacttagctagagtgagagcgggaacaagtgctcacagt 320

                                                                       
Query: 121 caacccatcagctatttcaccaacagaagctcaccatgggacattctttaaaagacctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacccatcagctatttcaccaacagaagctcaccatgggacattctttaaaagacctct 380

                                                                       
Query: 181 cattaatgttcaaactcactgtggtatccctggcagtggggccacagggactgctgctac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattaatgttcaaactcactgtggtatccctggcagtggggccacagggactgctgctac 440

                                                                       
Query: 241 cgttaggaaacaggacaggctgggtgtctccctatcctggggaccatgtccatgaaaatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgttaggaaacaggacaggctgggtgtctccctatcctggggaccatgtccatgaaaatc 500

                                                                       
Query: 301 tgtggttgttcaaagagtggcctgagagtatggttgaggaagatggcctattgtccattt 360
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 tgtggttgttcaaagagtggcctgagagtgtggttgaggaagatggcctattgtccattt 560

                                                                       
Query: 361 tcattgtccaggatgctggagtctccaaggagactctggcttctcctttctgagactaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcattgtccaggatgctggagtctccaaggagactctggcttctcctttctgagactaag 620

                                     
Query: 421 taacatcaaatgtgggccaagatgaa 446
           ||||||||||||||||||||||||||
Sbjct: 621 taacatcaaatgtgggccaagatgaa 646


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)