Query= MSMg01no350_o19.b1 MSMg01no350_o19.b1 CHROMAT_FILE:
MSMg01no350_o19.b1 PHD_FILE: MSMg01no350_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:02 2005
(249 letters)
>mm_chr1_76401977_76402625
Length = 649
Score = 383 bits (198), Expect = e-111
Identities = 246/282 (87%), Gaps = 33/282 (11%)
Strand = Plus / Plus
Query: 1 actacttacagcatcaccaggacacagaaacacagtccataccacaggagccattctctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actacttacagcatcaccaggacacagaaacacagtccataccacaggagccattctctc 260
Query: 61 aggaaactcccaggatattgaattaaatcaaggatcgctgtataaatggtgtcaagtgcc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggaaactcccaggatattgaattaaatcaaggatcgctgtataaatggtgtcaagtgcc 320
Query: 121 atagtatgaggcatgactttgatactgaagaagaaaagtacccccccct-gcc-c----- 173
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 321 atagtatgaggcatgactttgatactgaagaagaaaagtacccccccccagcctctctct 380
Query: 174 --------------------------ctctctctctctctctctctctctctctcttaat 207
||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctctctctctctctctctctctctctctctctctctctctctctctctctctcttaat 440
Query: 208 ttagaagggctggaaacttcattagtggatattagttcaagg 249
||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 ttagaagggctggaaacttcattggtggatattagttcaagg 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no350_o19.g1 MSMg01no350_o19.g1 CHROMAT_FILE:
MSMg01no350_o19.g1 PHD_FILE: MSMg01no350_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:02 2005
(477 letters)
>mm_chr1_76592058_76592934
Length = 877
Score = 833 bits (431), Expect = 0.0
Identities = 471/500 (94%), Gaps = 24/500 (4%)
Strand = Plus / Minus
Query: 2 catattcagctcactttctccttccagaatcccagcctatgatgtgatataggtcttcta 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 catattcagctcactttctccttccagaatcccagcctatgatgtgatataggtcttcta 643
Query: 62 gtctcaattaaatctttctagaaacattctaatagacacactcatgtgtgttccctaaat 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gtctcaattaaatctttctagaaacattctaatagacacactcatgtgtgttccctaaat 583
Query: 122 tcttaagttgacagtgtagattagccagcacatatacctagggaccactatcttggatta 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tcttaagttgacagtgtagattagccagcacatatacctagggaccactatcttggatta 523
Query: 182 gaatgatgcagtaaggaacttgcattctgtcctctaaactgtcaggtaaggttgagactg 241
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 522 gaatgatgcagtaaggaacttgcataatgtcctctaaactgtcaggtaaggttgagactg 463
Query: 242 ggatggtacaaggtgggaaaagaaggcttcacatacactgagtgctggaatagctggtta 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggatggtacaaggtgggaaaagaaggcttcacatacactgagtgctggaatagctggtta 403
Query: 302 tacttctctcagatgtttttgagtgaagggattgaagaaatcttgaaattatatatctct 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tacttctctcagatgtttttgagtgaagggattgaagaaatcttgaaattatatatctct 343
Query: 362 atctctatatctatctatatatatagagagactgtctttatatatatgtgtgtgtgtata 421
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 342 atctctatatctatctatatatagagagagactgtctttatatatatgtgtgtgtgtata 283
Query: 422 tatatatatacata------------------------cacatttatcaacccagttctc 457
|||||||||| ||| ||||||||||||||||||||||
Sbjct: 282 tatatatatatatatatatatatatatatatatacacacacatttatcaacccagttctc 223
Query: 458 aacatttaangatgctaaag 477
||||||||| ||||||||||
Sbjct: 222 aacatttaaggatgctaaag 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space: 404889
Effective search space used: 404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
