NNNNTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAGTAGAATCTCCCACTAGGGATGCATTTTAAAAGAAAG
GGGTAACTGATCTAAAATGCAGGTTTTGATAGAACATTTTTTAAAGTAAG
AAATTGGGACTTCACTAACGTTGTGAAAAGAAAGCAATGGTGAAGATCGC
ATGGCCGCTTGGATTCTGTGTGTCTTAAGTCAGACATTGCCTCAAAATTG
GTTCTTAATTTCTACACTAATATAAAGTAAAAAGAAAAAAAAACCAGAAA
TGTTATGGATGATTATTCAGGCTATTATTGGTCACTTATCCATACGTCTC
CAAAAAATAAAATCTGATTTTAGAATTATTTAAAATATTAGCTAAAATGT
ATATAAATGTATAAACTCTAACAATCACATGAAATTACTATTAAAACAAA
GAAAAGTTGATCCACAGGAATAAGAACACCTCACACCTGACTCTTGGGCA
TTATCACAGGTCACAGATGGAATATGTCAAGGAGTAGACGATGCCCCATT
CTCCCCTGTATTCTTCTTCTGTTACCAAGGGTGCCCAAGCCTTTGGAGCC
CTCCAGCCCATAACTTCTTCCTGAGCATCATGAGGAGGATGAGGGATGTT
GGGATGTTGGTCATTGGTGCTTAAATTTGTCTTTTCTTGGAAGTTCATCC
CAAAAGGATTAAGTTCCCGTATTCTTCTAGAAAGTGAGTCTA

NNNCCCCTCTATGTTTTATCCCTAACACTCGACACGCCGCCCCCGCCCCG
CCCCACTCTCACGTCGACACGTAATAAAATGGATTCTGCGCGATAATCTC
CTCCCTCCCCGTAGTGCATACTAGCTACTACACATCGACACCATTGCTCC
TCATGACAGGTCTTTTCGACGCAATCTATATTCTCATCACCCTTGTATCT
CCTCTGTCTGGTCTGGGACTCTCTATATCACTTCTTTAGCGAGCTCAGTT
ACTGGGCACCACAAAGCCACCACGTTTTTCCTATCCGTCCTCTGATACTA
CGACATGCTCAGTACACGCTCTCTATCCTGCCATCATGGTAGCATGCCTC
TGGTGCCGCTCATCTTCCTATTGTACACCTGCACCTGCCTACATAATTCC
TCCTGCCTACTATATCCTGATACAGCTCGCTTCAACTATGAATTACGCTA
CACCTTGCTTCGTTGCTAATAATTTGTTTAATAATTGCCTTTTACTCATT
TTCTCTATGTATCCTCTCGGTCCCTTCCTTACACGAGCCCTCGCGATCTC
CCACTTTTTATCTTCTTCGTTCTACACATCCCCCTGCTCTATGGCATATT
ACATTGGCTTCACGAATCACCGTTAGTTGCTTAAACCGCGGCCATCTTCC
TTCCTGCTATATTGACCCAGTCCACCTACTTCTCCATGCGAGTCTTGTTT
GTTCCATCACACATCCCGCCTATTTCCTCACACATCCTCTTCTACCCCCC
TTTCTTTATCCCCACCATACTTTTCATCCTACGTATCACTAAATAGCTCC
TGTTTCCCACTCTCTATCTATAAAGTCTCGTCGCCATATCAACACATGTG
TTATACCACGCAATACTCGTCATACCACAGTCACCACTTCTAATACCATG
CTTCTCACCTGGTATTACCACCGACCTTATCGTTCATTCCTTCCCCTTTA
CTCCTCCTCTATCTACAACACTACAATAAAGATCCTATATACAACACCCT
ATATATAATACACTCACATAACANCCCTCCTCCACACTTACCCGCGCTTT
CTCCCTCTATCGTCCTTCTCTGCATAACATAATGTCTGATTACGCTATGA
TCCTCACAATCACTCCCAATTGCCCGTACGTACATATGTTCGACANTCTA
TCTCTCACACTN

Query= MSMg01no351_c07.b1 MSMg01no351_c07.b1 CHROMAT_FILE:
MSMg01no351_c07.b1 PHD_FILE: MSMg01no351_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:19 2005
         (586 letters)



>mm_chr1_81580244_81581229
          Length = 986

 Score = 1064 bits (550), Expect = 0.0
 Identities = 574/582 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtagaatctcccactagggatgcattttaaaagaaaggggtaactgatctaaa 64
           |||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtaaaatctcaaactagggatgcattttaaaagaaaggggtaactgatctaaa 264

                                                                       
Query: 65  atgcaggttttgatagaacattttttaaagtaagaaattgggacttcactaacgttgtga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgcaggttttgatagaacattttttaaagtaagaaattgggacttcactaacgttgtga 324

                                                                       
Query: 125 aaagaaagcaatggtgaagatcgcatggccgcttggattctgtgtgtcttaagtcagaca 184
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaagaaagcaatggtgaagatcacatggccgcttggattctgtgtgtcttaagtcagaca 384

                                                                       
Query: 185 ttgcctcaaaattggttcttaatttctacactaatataaagtaaaaagaaaaaaaaacca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgcctcaaaattggttcttaatttctacactaatataaagtaaaaagaaaaaaaaacca 444

                                                                       
Query: 245 gaaatgttatggatgattattcaggctattattggtcacttatccatacgtctccaaaaa 304
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 445 gaaatgttatggatgattattcaggctattattggtcacttatccataagtctccaagaa 504

                                                                       
Query: 305 ataaaatctgattttagaattatttaaaatattagctaaaatgtatataaatgtataaac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ataaaatctgattttagaattatttaaaatattagctaaaatgtatataaatgtataaac 564

                                                                       
Query: 365 tctaacaatcacatgaaattactattaaaacaaagaaaagttgatccacaggaataagaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctaacaatcacatgaaattactattaaaacaaagaaaagttgatccacaggaataagaa 624

                                                                       
Query: 425 cacctcacacctgactcttgggcattatcacaggtcacagatggaatatgtcaaggagta 484
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cacctcacatctgactcttgggcattatcacaggtcacagatggaatatgtcaaggagta 684

                                                                       
Query: 485 gacgatgccccattctcccctgtattcttcttctgttaccaagggtgcccaagcctttgg 544
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 685 gacgatgccccattctcccctgtattcttcttctgttaccaagggtgtccaagcctttgg 744

                                                     
Query: 545 agccctccagcccataacttcttcctgagcatcatgaggagg 586
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agccctccagcccataacttcttcctgagcatcatgaggagg 786


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)