BAC Information

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BAC

Clone NameMSMg01-351C16
Chromosome1 (Build37)
Map Location 64,736,743 - 64,737,221
singlet/doubletsinglet
Overlap geneCcnyl1
Upstream geneMdh1b, Fastkd2, 4933402D24Rik, LOC671842, OTTMUSG00000013918, Klf7, Ppia-ps1_583.1, LOC100043124, Creb1, 2310038H17Rik
Downstream geneFzd5, 9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351C16.T7 (MSMg01no351_c16.b1)MSMg01-351C16.TJ (MSMg01no351_c16.g1)
ACCAG462603AG462604
length735733
length of high quality
(start - end)		478 (55 - 532)556 (85 - 640)
definitionCHROMAT_FILE: MSMg01no351_c16.b1 PHD_FILE: MSMg01no351_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:21 2005CHROMAT_FILE: MSMg01no351_c16.g1 PHD_FILE: MSMg01no351_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAATAAAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTGGTTTCCTTTCATCTCGAGCTGCGCCGAGTCCAGC
TCCTACTGGGGAGCTGCGGCAGTTTGTTACTCGAGGCCGCCCTTCAAGGC
GGGCCCCGAAGGTCCGGCCTGGTGAAGAGTTGGTTTTGTCAGCAGTTTGG
TTTCTCCATGTTTGACAGCTTCCCTTTGCTCACCCAAGTAAGTTGCACCG
GACTTAGCCGGTTGTATATGGCTAAATGCTCTTCTCCTGTCTTCCCAGTG
TTACGTTCTCGCTTGCAACTTGGCCATAGCAACCCCGGGGCTCGCTCCTT
ACTCTCAATAAAGAGTCGTGACTGTGTCTTGCATGAAACCCGAGGACACG
TCACTCTTCAATTTCCTCGTACGTCAAATAAGGACCAAACTCTCGGTTCA
GAAAAGCTGGGAGCCAGCAACTCCGGTTTCGCTTGTTTTCTGCCATCACA
AGACAGGAGTTTCCAGACTTTGTTTCTTTAACTAGCAATGCAGAGAACAG
TTTTTCTCCCACAAAATAGAGAACCTCACTGTTGGGTGCCCACAGTCCTA
AGTGATTGGGATGGAATAAAGCAATTGGCCTTTTTCTTGTCCCAAGTATT
GTCCATCCTGTCTTCCGATTTCTCTTATTGTTTATCCTCAAGAAACTTCC
CCTGGTTTGATTTCCCCCCATTTTACTTGCCCTCG

CCCCNNNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAACTTTTCAGCTGG
GGAACAGAAGTACCAGTGAGTACAGCTTTACAAGGTAAGTCTGGTCTTGA
ACTTTCTAAGGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGGAATAG
CTTTACAAGGTACGCCTGGCCTTGAACTTTCTAACGAAATTCAAGACAGT
CTATCAGAAGTAAAGTGGAAAATAGCTTTACAAGGTATGTTTGGCCTTGA
ACTTTCTCTAGTGTTAGAAGCCCTTTTGTTCCTTTTCACATGTTATCAAG
TGGTTAAGGCAGGGCGGATTCTGGATGAAGTTCAGGACAATCTATCAGAA
GTAAAGCGGGGAGAGAGAATAGGAGCAAAGAGAAAATATGGTTCACAAAA
TAAGTATACAGGCCTTTCCAAGGGTCTTGAACCCGAGGAAAAGTTAAGGT
CAGGTAAGAATACCTGGGGAGAGATTAGAAGGAAGGAGAAGGAAAAAGAA
AAGAAAAAAGATCAATTAGAGGAGCCAGTTCTTAGAAGTTCTGAATCAGA
TGAAAAGGCTATTAGGGCCTGGAAGGCGCTCTCCCGAGCAGGTGAAGCCA
CTGGACAATAATGACAGAGGCAGGCTCTTGCAGCCTACAAGGGCTTATTG
TCCACCCTGGAGTTGTAGATCAGGATTGTAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_c16.b1 MSMg01no351_c16.b1 CHROMAT_FILE:
MSMg01no351_c16.b1 PHD_FILE: MSMg01no351_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:21 2005
         (478 letters)



>mm_chr1_64736543_64737421
          Length = 879

 Score =  888 bits (459), Expect = 0.0
 Identities = 474/479 (98%), Gaps = 1/479 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgcg-gaattctggtttcctttcatctcgagctgcgccgagtccagctcctactggggag 59
           |||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 679 cgcgcgaattctggtttccattcatctcgagctgcgccgagtccggctcctactggggag 620

                                                                       
Query: 60  ctgcggcagtttgttactcgaggccgcccttcaaggcgggccccgaaggtccggcctggt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctgcggcagtttgttactcgaggccgcccttcaaggcgggccccgaaggtccggcctggt 560

                                                                       
Query: 120 gaagagttggttttgtcagcagtttggtttctccatgtttgacagcttccctttgctcac 179
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 559 gaagagttggttttgtcagcagtttggtctctccatgtttgacagcttccctttgctcac 500

                                                                       
Query: 180 ccaagtaagttgcaccggacttagccggttgtatatggctaaatgctcttctcctgtctt 239
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ccaagtaagttgcactggacttagccggttgtatatggctaaatgctcttctcctgtctt 440

                                                                       
Query: 240 cccagtgttacgttctcgcttgcaacttggccatagcaaccccggggctcgctccttact 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cccagtgttacgttctcgcttgcaacttggccatagcaaccccggggctcgctccttact 380

                                                                       
Query: 300 ctcaataaagagtcgtgactgtgtcttgcatgaaacccgaggacacgtcactcttcaatt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ctcaataaagagtcgtgactgtgtcttgcatgaaacccgaggacacgtcactcttcaatt 320

                                                                       
Query: 360 tcctcgtacgtcaaataaggaccaaactctcggttcagaaaagctgggagccagcaactc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tcctcgtacgtcaaataaggaccaaactctcggttcagaaaagctgggagccagcaactc 260

                                                                      
Query: 420 cggtttcgcttgttttctgccatcacaagacaggagtttccagactttgtttctttaac 478
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cggtttcgcttgttttctgccatcacaagacaggagtttccagactttgtttctttaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 879
Length adjustment: 10
Effective length of query: 468
Effective length of database: 869
Effective search space:   406692
Effective search space used:   406692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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