NNNTTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTATCAGAACTTCAAAGAACTAATACCAATAAGATTC
GTAATATTCCATAAAATAGAAAAGGAAGGATTGCAAACTCTTTTTATGAA
TTCAGTGTTACTCAAAACACATAAAAATACCACAAACAGAAATATTACAA
CTTGTTATCCCTGATGAATGCAATTCTAAAAATTCTCAATGAAACTTTTG
CAAATCAAATTAAATATCACATGATAACGGTAATTTATCAAGGCCAATTT
GGCTTTACTTCAAAGACACAGGAATGGCTCATCAAATATTAATCAATAAT
TGTAATTTTCCATGTAAGTCAACAAAAGTATAAAAATCCTACCATCTCAA
AAGATTGAAAAAGCCTTTGAGAAATCCTACATCTCTCTAAGATCTAATAA
GGAAATCCATAGACCATAATGACTCTGCATGACAATACTGAAACCAATAA
TATACCAAATGGGGAAATCTTAAAAGTGTTCACATGAAGATCAGAAACAT
GACAAGGGTGTGTATCCTTTACACTTCTATCCAATAAAGTGGTTGAAGTC
TTCATGAAAGCAATATGACAAATGAAGAAAACAGGCTACAACAGGAGAAG
CAGAAGTAGAAATATCCCAGTTTTCAGATGGTTGCATTCTACTCCTAAGA
CATACATACTAATATAGAATCCAGGG

NTTTTTTTNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACAAAAGGAAGTAG
TGACACCTCAAATCAAGCACATAATGGGGTCTTCTTTCCAACCAAAATTA
AATGCAAGAATGGCTTGTATGTTTACTGAGATTATACAGTCTTGGCTTTT
TGAGGTGACAGCAGATGGTCGGATAAGGAGCAGCAGGACCAAGTGCAAGC
AACAGCATTTCATCTCCGGCTCTCTTAACCATAAAATCTATGAATTTATG
CTTAACAGAGTGACGAAGGGCAAAGAAAAACATGAGAAGTGTCAGGGCAA
AGCAGGCTACACCTTGTCTTTCTCAAGACAAATCAAATCCTAAGTATCTC
CTCTCTTACCTTCAGACAAAGACGCTGACTTTTCTTAAAATGTCACTAAT
CAAAAAATGTCACTTACACATGCTTGTACTGTATCAGTTAGTTTTAGATA
CTTTGTGGTTTGGCTTAGAACATTTTATTTCTAATTTCCCAGCCCCAGAG
CCTCAGCCAAGTAAGCATCAGCTCCTACTTTATTTTCCAAATTCTATCAT
TCTTCAAATATCACTTGGGATGGTTTCCAGTGCTCCATGGCTTTGAAAGA
TTTACTTTTTCCTTTTTTTTTTCCTCCCTTTCCTTTTTTTTAACCGAAAG
AAAGGAAAAATGCCACCCTGTTATTTTTATTTATCAGCATAN

Query= MSMg01no351_d15.g1 MSMg01no351_d15.g1 CHROMAT_FILE:
MSMg01no351_d15.g1 PHD_FILE: MSMg01no351_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:25 2005
         (534 letters)



>mm_chr1_41563114_41564047
          Length = 934

 Score = 1017 bits (526), Expect = 0.0
 Identities = 532/534 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacaaaaggaagtagtgacacctcaaatcaagcacataatggggtcttctttccaaccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 aacaaaaggaagtagtgacacctcaaatcaagcacataatggggtcttctttccaaccaa 675

                                                                       
Query: 61  aattaaatgcaagaatggcttgtatgtttactgagattatacagtcttggctttttgagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 aattaaatgcaagaatggcttgtatgtttactgagattatacagtcttggctttttgagg 615

                                                                       
Query: 121 tgacagcagatggtcggataaggagcagcaggaccaagtgcaagcaacagcatttcatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tgacagcagatggtcggataaggagcagcaggaccaagtgcaagcaacagcatttcatct 555

                                                                       
Query: 181 ccggctctcttaaccataaaatctatgaatttatgcttaacagagtgacgaagggcaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ccggctctcttaaccataaaatctatgaatttatgcttaacagagtgacgaagggcaaag 495

                                                                       
Query: 241 aaaaacatgagaagtgtcagggcaaagcaggctacaccttgtctttctcaagacaaatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 aaaaacatgagaagtgtcagggcaaagcaggctacaccttgtctttctcaagacaaatca 435

                                                                       
Query: 301 aatcctaagtatctcctctcttaccttcagacaaagacgctgacttttcttaaaatgtca 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 434 aatcctaagtatctcctctcttaccttctgacaaagacgctgacttttcttaaaatgtca 375

                                                                       
Query: 361 ctaatcaaaaaatgtcacttacacatgcttgtactgtatcagttagttttagatactttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ctaatcaaaaaatgtcacttacacatgcttgtactgtatcagttagttttagatactttg 315

                                                                       
Query: 421 tggtttggcttagaacattttatttctaatttcccagccccagagcctcagccaagtaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tggtttggcttagaacattttatttctaatttcccagccccagagcctcagccaagtaag 255

                                                                 
Query: 481 catcagctcctactttattttccaaattctatcattcttcaaatatcacttggg 534
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 catcagctcttactttattttccaaattctatcattcttcaaatatcacttggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)