Query= MSMg01no351_e12.b1 MSMg01no351_e12.b1 CHROMAT_FILE:
MSMg01no351_e12.b1 PHD_FILE: MSMg01no351_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:29 2005
(563 letters)
>mm_chr1_191149669_191150632
Length = 964
Score = 994 bits (514), Expect = 0.0
Identities = 549/561 (97%), Gaps = 3/561 (0%)
Strand = Plus / Plus
Query: 5 gaattcattgatat-tccatctgactgattgattataagcttcaagagttttggtttact 63
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattgatatataaatctgactgattgattataagcttcaagagttttggtttact 264
Query: 64 ggcttaagggaatttgtgacatctagtcacgggggatggatggctgcgaaggtacgagcg 123
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 265 ggcttaagggaatttgtgacatctagtcacaggggatggatggctgtgaaggtacgagcg 324
Query: 124 gctctgaggcaggtgaactggagtggggtcactgggcccaagagtagccgggtatagcat 183
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gctctgaggcaggtgaa-tggagtggggtcactgggcccaagagtagccgggtatagcat 383
Query: 184 gggatggtgccagtttttattatttttcacaacagacaccccctgtgatctctaaaacca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gggatggtgccagtttttattatttttcacaacagacaccccctgtgatctctaaaacca 443
Query: 244 tgaaatgcccaacattacattaagtctttaaaaatctcacaagccaagggaaagataaac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgaaatgcccaacattacattaagtctttaaaaatctcacaagccaagggaaagataaac 503
Query: 304 ataaatgacagtaaaggttgttcctgcttgggtaaaatccagtagatttgagagagagag 363
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ataaatgacagtaaaggttcttcctgcttgggtaaaatccagtagatttgagagagagag 563
Query: 364 ggtaagccaagctaccctactgaacaatcatttgagtaacttagaaggaagatttagact 423
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggtaaaccaagctaccctactgaacaatcatttgagtaacttagaaggaagatttagact 623
Query: 424 ccatggatctgcttgaaggcaagtgctcaacaattggtaattgcaattgccaatatgcaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ccatggatctgcttgaaggcaagtgctcaacaattggtaattgcaattgccaatatgcaa 683
Query: 484 cgcataaggcaagaatagagagaggaaagaaagaanaccatttgttttggtaaagaaaaa 543
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 684 cgcataaggcaagaatagagagaggaaagaaagaaaataatttgttttggtaaagaaaaa 743
Query: 544 aaaa-ctggagaaacagctca 563
|||| ||||||||||||||||
Sbjct: 744 aaaaactggagaaacagctca 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 964
Length adjustment: 10
Effective length of query: 553
Effective length of database: 954
Effective search space: 527562
Effective search space used: 527562
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no351_e12.g1 MSMg01no351_e12.g1 CHROMAT_FILE:
MSMg01no351_e12.g1 PHD_FILE: MSMg01no351_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:29 2005
(493 letters)
>mm_chr1_191312924_191313821
Length = 898
Score = 893 bits (462), Expect = 0.0
Identities = 488/498 (97%), Gaps = 5/498 (1%)
Strand = Plus / Minus
Query: 1 agcccctaaaagaatgccaaactatggtggtgacttattccgcacaggcaagctatgaaa 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 698 agcccctaaaagaatgccaaaccatggtggtgacttattccgcacaggcaagctatgaaa 639
Query: 61 gggtctgccccacaggcatattcacgtcaaggactagaactggccagcttcaatcactga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gggtctgccccacaggcatattcacgtcaaggactagaactggccagcttcaatcactga 579
Query: 121 gcatggacagac--tgcgccaggcttttcctaggttatgtcctttctttaagacatcatt 178
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gcatggacagactgtgcgccaggcttttcctaggttatgtcctttctttaagacatcatt 519
Query: 179 ctggtacttcttttgtggataaaagcaggtgccatgtatctctgccaagtctgttgagct 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ctggtacttcttttgtggataaaagcaggtgccatgtatctctgccaagtctgttgagct 459
Query: 239 ctctggaggtaagggcaccgactggaaaaactttccgaattaggagtcagctgtgcttct 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ctctggaggtaagggcaccgactggaaaaactttccgaattaggagtcagctgtgcttct 399
Query: 299 ctttcaagagatatcagatgg-ag--gtctgatcagaaactcttaccctctgtgctagaa 355
||||||||||||||||||||| || ||||||||||| | ||||||||||||||||||||
Sbjct: 398 ctttcaagagatatcagatggaagaagtctgatcagagattcttaccctctgtgctagaa 339
Query: 356 ggaaaatcaatctaactggaaatgaaaatgcagatttctttaaaacacccccacggtctt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ggaaaatcaatctaactggaaatgaaaatgcagatttctttaaaacacccccacggtctt 279
Query: 416 ctgaatttgcatattcctaattccagttttgactctttcccatttttgtttttgttgatg 475
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 278 ctgaatttgcatattcctaattccggtttcgactctttcccatttttgtttttgttgatg 219
Query: 476 aaagaaaaaagaaaagaa 493
||||||||||||||||||
Sbjct: 218 aaagaaaaaagaaaagaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 898
Length adjustment: 10
Effective length of query: 483
Effective length of database: 888
Effective search space: 428904
Effective search space used: 428904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
